Gene

KWMTBOMO14159

Pre Gene Modal

BGIBMGA011179

Annotation

pleiohomeotic_[Bombyx_mori]

Location

Bomo_Chr23(-):19506419-19517239      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.416

CDS

ATGTGTGAAGTGGAAATTGGCACTCATGGAGCTATAGAAATAGACGGGGATGATCAAGTTCAAGTTGGTGTTAAGTATGAAGAAATAGAAACGGGCCAGTATGAGGAATATATAACTGATGATCAATATGAAGAGGTTGAAGAGCAGGTCATTGGGATGCAGCATCTGGAAGAAATTGGGAGTGAAGAGGTTGTATTACCAGGTATATCTGGAGAAGAAGTCCTGACATCAGCTGGTGAGAATCCTTTTGATCCTCTCTACACGGATTCTGCTTCCACCAGCAACAGGACAAATCGAAGCAGACCTAGAGCTAATAATATATCGAGCAACATACAACATCTAATGCCAATAGGTGAAGTACCAATGGGGTTAATGGACGGTATGAGCGCGACCAGGGGCACCACTAGAAAGTGGGAACAGAAGAAGGTCCAGATCAGGACAATGGAGGGAGAGTTCTCAGTCACCATGTGGGCTACAGGAGAAGACGATGATGAAACGTCAAATCCTGAACCAGACCCTGACTACACAGAGTACATGACTGGGAAGAAGAATATATTAGGAAACGAATCTATGCCGGGTCTAGATTTATCGGATCCGAAGCAACTGGCGGAGTTCGCGCGGCCCGGACACAAGATCAGACTAAAGAAACCATCCCCCGAAACTTCAGATAGAACAATAGCATGTCCACACAAAGGCTGCACAAAAATGTTCAGAGACAATTCAGCGATGAGGAAGCATCTGCACACGCACGGACCGAGGGTGCACGTGTGCGCCGAATGTGGAAAAGCCTTTGTAGAAAGCTCTAAATTGAAACGACATCAGCTAGTACACACTGGAGAGAAGCCCTTTCAATGTACGTTTGAGGGCTGCGGGAAGAGATTCTCACTAGATTTTAATTTGAGAACGCACGTCCGCATCCATACTGGAGATCGACCGTACGTTTGTCCCTTCGACGGTTGCAACAAAAAATTCGCTCAGAGCACAAACCTGAAGTCGCACATACTAACGCACGCGAAAGCGAAATCAAGAAATTCATTATCAAGGAACGGCGGGAATTCGTATGAGTCGGCACGAACGACCCCACAGTACGTTCAATTGGAAATGTCACCGGATGATTCTAATCCACAACTCGTGTTCTACACGCACGAGTGA

Protein

MCEVEIGTHGAIEIDGDDQVQVGVKYEEIETGQYEEYITDDQYEEVEEQVIGMQHLEEIGSEEVVLPGISGEEVLTSAGENPFDPLYTDSASTSNRTNRSRPRANNISSNIQHLMPIGEVPMGLMDGMSATRGTTRKWEQKKVQIRTMEGEFSVTMWATGEDDDETSNPEPDPDYTEYMTGKKNILGNESMPGLDLSDPKQLAEFARPGHKIRLKKPSPETSDRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKSRNSLSRNGGNSYESARTTPQYVQLEMSPDDSNPQLVFYTHE

Similarity

Belongs to the peptidase C19 family.

Uniprot

E5RWX7   A0A194PTW2   A0A2A4IZF0   A0A2W1B6U2   A0A212FD44   A0A1L8DHU8   + More
A0A0K8TN61   A0A1B0GLH0   A0A1B0D9R7   A0A1W4XJE6   A0A0P6IYK9   A0A151I7J5   A0A195FBS0   A0A158NK84   A0A151X727   A0A195B9Z8   A0A195EI15   A0A182H9T2   E9JAN9   A0A026X221   A0A088AD22   V9ILS1   A0A1Q3EWE7   A0A0K8SG33   A0A0A9WVA4   A0A146LI48   U5EFC1   A0A2A3EKB7   A0A0M8ZSD9   A0A3L8D7V6   B0X5W9   A0A0L8GGU3  

Pubmed

22485166    26354079    28756777    22118469    26369729    26999592    + More
21347285    26483478    21282665    24508170    25401762    26823975    30249741   

EMBL

AB607837    BAJ54071.1    KQ459593    KPI96413.1    NWSH01004998    PCG64512.1    + More
KZ150337    PZC71318.1    AGBW02009108    OWR51661.1    GFDF01008052    JAV06032.1    GDAI01001791    JAI15812.1    AJWK01034925    AJVK01028422    AJVK01028423    AJVK01028424    AJVK01028425    GDUN01000976    JAN94943.1    KQ978406    KYM94169.1    KQ981693    KYN37657.1    ADTU01018740    KQ982472    KYQ56110.1    KQ976537    KYM81356.1    KQ978881    KYN27796.1    JXUM01121393    JXUM01121394    JXUM01121395    JXUM01121396    JXUM01121397    KQ566495    KXJ70082.1    GL770679    EFZ10068.1    KK107021    EZA62337.1    JR051989    AEY61602.1    GFDL01015414    JAV19631.1    GBRD01013570    GBRD01013569    JAG52256.1    GBHO01033161    GBHO01033160    GBHO01033159    JAG10443.1    JAG10444.1    JAG10445.1    GDHC01016718    GDHC01012092    JAQ01911.1    JAQ06537.1    GANO01003922    JAB55949.1    KZ288220    PBC32148.1    KQ435878    KOX69997.1    QOIP01000011    RLU16535.1    DS232397    EDS41100.1    KQ422015    KOF75765.1   

Proteomes

UP000053268    UP000218220    UP000007151    UP000092461    UP000092462    UP000192223    + More
UP000078542    UP000078541    UP000005205    UP000075809    UP000078540    UP000078492    UP000069940    UP000249989    UP000053097    UP000005203    UP000242457    UP000053105    UP000279307    UP000002320    UP000053454   

PRIDE

E5RWX7   

Pfam

PF00096   zf-C2H2        + More
PF00443   UCH
PF07690   MFS_1

Interpro

IPR017114   YY-1-like        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR018200   USP_CS       
IPR038765   Papain-like_cys_pep_sf       
IPR001394   Peptidase_C19_UCH       
IPR029071   Ubiquitin-like_domsf       
IPR028889   USP_dom       
IPR000626   Ubiquitin_dom       
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR011701   MFS       

SUPFAM

SSF57667   SSF57667        + More
SSF54001   SSF54001       
SSF54236   SSF54236       
SSF103473   SSF103473       

CDD

cd06174  MFS

ProteinModelPortal

E5RWX7   A0A194PTW2   A0A2A4IZF0   A0A2W1B6U2   A0A212FD44   A0A1L8DHU8   + More
A0A0K8TN61   A0A1B0GLH0   A0A1B0D9R7   A0A1W4XJE6   A0A0P6IYK9   A0A151I7J5   A0A195FBS0   A0A158NK84   A0A151X727   A0A195B9Z8   A0A195EI15   A0A182H9T2   E9JAN9   A0A026X221   A0A088AD22   V9ILS1   A0A1Q3EWE7   A0A0K8SG33   A0A0A9WVA4   A0A146LI48   U5EFC1   A0A2A3EKB7   A0A0M8ZSD9   A0A3L8D7V6   B0X5W9   A0A0L8GGU3  

PDB

1UBD     E-value=1.46457e-67,     Score=650

KEGG

100529122    K09201 transcription factor YY | (RefSeq) PHO; pleiohomeotic

GO

GO:0003676   GO:0006355   GO:0036459   GO:0016579   GO:0006511   GO:0016021   GO:0046872   GO:0030117   GO:0005198   GO:0030126   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

383

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0017

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00674

outside

1  -  383

 

 

Pi

13.950529

Theta

16.896005

Tajima's D

-0.783816

CLR

0.878043

CSRT

0.179641017949103

Interpretation

Uncertain