HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	13.3	0.5	0.0013	0.08	1	21	89	109
2	27.6	1.2	3.9e-08	2.3e-06	1	23	170	192
3	21.8	0.3	2.8e-06	0.00017	2	23	199	220
4	19.0	0.2	2.1e-05	0.0012	1	23	229	251

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C++C+  + ++ +Lk+H+ 
  KWMTBOMO13456  89 YVCHECNSQYEHPNLLKVHLL 109
                    9******************85 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 3.9e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk ++rk+ Lk HirtH
  KWMTBOMO13456 170 HVCVYCGKAYSRKYGLKIHIRTH 192
                    79********************9 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 2.8e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C + F ++snL++H r H
  KWMTBOMO13456 199 RCRYCARAFGDPSNLNKHVRLH 220
                    8*******************99 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 2.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp Cg+   r+ +L+rH+r H
  KWMTBOMO13456 229 HVCPACGRALARRRDLERHLRAH 251
                    79*******************99 PP