HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.4	1.2	3.9	2.3e+02	2	19	288	306
2	21.2	0.5	4.5e-06	0.00027	1	23	312	334
3	13.5	0.3	0.0012	0.07	1	23	340	362
4	19.9	1.5	1.1e-05	0.00068	1	23	368	390
5	25.1	4.5	2.5e-07	1.5e-05	1	23	396	418
6	16.3	0.3	0.00016	0.0095	1	23	424	447

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 3.9
                    EETTTT.EEESSHHHHHHH CS
        zf-C2H2   2 kCpdCg.ksFkrksnLkrH 19 
                    +Cp+Cg  +F+   ++ +H
  KWMTBOMO13189 288 VCPVCGiLTFTLGNHMSTH 306
                    7999998888544444444 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 4.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp C+++F +k nL++H + H
  KWMTBOMO13189 312 FACPQCPRTFAQKTNLQTHVKQH 334
                    78******************999 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 0.0012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg  F ++ +L+rH  +H
  KWMTBOMO13189 340 HICEVCGAGFYSQKSLVRHNLIH 362
                    67*****************8887 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+k+F    +L+rH+r+H
  KWMTBOMO13189 368 FSCNLCSKRFIAMQSLRRHMRIH 390
                    89********************9 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 2.5e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+ksF ++++L++H+ tH
  KWMTBOMO13189 396 FKCDICNKSFIQNHHLQNHMLTH 418
                    8*********************9 PP

  == domain 6  score: 16.3 bits;  conditional E-value: 0.00016
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C+  F+ k nL++H  + H
  KWMTBOMO13189 424 YSCEVCNVAFSYKVNLNNHVFKaH 447
                    89*****************98888 PP