HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.3	0.5	0.00033	0.02	1	23	193	215
2	23.6	2.0	7.7e-07	4.6e-05	1	23	221	243
3	20.5	0.6	7.1e-06	0.00042	2	23	252	273
4	19.5	1.0	1.5e-05	0.00092	1	23	279	301
5	24.8	2.4	3.1e-07	1.8e-05	1	23	307	329
6	23.2	1.7	1e-06	6.1e-05	1	23	335	357
7	17.4	7.2	7.1e-05	0.0042	1	23	363	385
8	15.9	1.6	0.00021	0.013	1	21	391	411

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 0.00033
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+++F + + L++H+++H
  KWMTBOMO13125 193 FKCNICSQVFLSDDALTTHMSRH 215
                    8*********************9 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7.7e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cgk+F++  n+k H+++H
  KWMTBOMO13125 221 YSCNECGKTFSQLRNFKYHMSIH 243
                    89*******************99 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 7.1e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cgk F+++  L +H+++H
  KWMTBOMO13125 252 TCTVCGKYFNDRGYLSSHMKIH 273
                    7*******************99 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 1.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C+ksF+++  ++ H r+H
  KWMTBOMO13125 279 YKCSQCPKSFNQRVAYNMHVRIH 301
                    9********************99 PP

  == domain 5  score: 24.8 bits;  conditional E-value: 3.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F+rk +Lk+H+rtH
  KWMTBOMO13125 307 HVCDQCGKAFSRKMLLKQHQRTH 329
                    79********************9 PP

  == domain 6  score: 23.2 bits;  conditional E-value: 1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C+k+F ++sn++ H+r H
  KWMTBOMO13125 335 YACPHCDKRFADRSNMTLHLRLH 357
                    88********************9 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 7.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+ksF+ k++Lk+H++ H
  KWMTBOMO13125 363 FSCTLCPKSFTKKHHLKSHLNFH 385
                    89******************988 PP

  == domain 8  score: 15.9 bits;  conditional E-value: 0.00021
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y Cp C+  F+++sn+++H++
  KWMTBOMO13125 391 YSCPRCKLAFTQSSNMRTHYK 411
                    89*****************98 PP