Silkworm Genome Informatics Database

Gene

KWMTBOMO13125

Pre Gene Modal

BGIBMGA000376

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF7.1-like_[Papilio_xuthus]

Location

Bomo_Chr22(-):8868832-8878460 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.102

CDS

ATGTGTGAATGGCTGTCGTACGCCGATTGGTGCGATGTGAAATTGCTCTGTGGCGATCGTACATTCGAGGCTCATCGTGTTGTTCTTGCCAGCGCCAGTACCTTCCTTAGGGAAATTCTCTTATCCTGCCACACGAATGAGACACCGACGCACATGATGCTACCGGATTTCGACAAGGAAGCCATGTCGGCGGTTCTACATTATATTTATAATGGGGAGGTCGTTTTACAAAAACAGAAAATGGACATGTTCTTGGATATAGTGAAAGCTATGCGAATATATATTGATTACGAACTTTTGAATCCAGATCTGGCTACTGATTTTGAAAACGAATACTGCGAATCTAAAACGAATGCTAGAACTATATCGAAAGCAGCAATATCAAATCATGTTCTAGAGAACCCTTGGCGACCACGGCTACCCGTAGATGCGAAGCCTTTTCGCAGGAAATTCAAAGAATCAAGTGAAAAATTACCCTTACTGAACAAGGTGTCTGAAGCTGTTAGCGATAATAACAATAACTGTGCAACTACCCCTGCTGCACTAAGCAACCAACTTCCAGTCTTAAAAGACGAGTTCAAATGCAACATTTGTAGCCAGGTGTTTCTGTCTGACGATGCGTTGACCACACATATGAGTCGACATTCAAAAACTGCACGTTATTCCTGTAACGAATGCGGCAAAACATTCTCACAGCTGCGCAACTTCAAGTACCATATGTCGATTCACAGAGGCACTAGAGAGTTTGCAGCGACATGCACTGTTTGTGGAAAGTATTTCAACGACAGAGGATACCTAAGCAGTCATATGAAAATACATAGAAATCGTAAGGAATACAAATGTTCGCAATGTCCGAAATCTTTCAATCAGCGTGTCGCTTATAACATGCACGTAAGAATACATACAGGTGTGAAGCCTCATGTGTGCGATCAGTGCGGCAAAGCGTTTTCCCGTAAGATGCTCCTGAAGCAACATCAGCGCACACATTCGGGCGAACGACCTTACGCCTGTCCGCACTGCGACAAGCGGTTCGCTGACAGATCCAACATGACCCTCCACCTAAGACTCCATACTGGTGTGAAGCCATTTTCGTGTACGCTATGTCCAAAATCGTTTACGAAGAAACATCATCTTAAATCTCATTTAAACTTTCACACTGGTTCTAAGCCCTATTCTTGCCCGCGTTGTAAGCTCGCATTCACACAATCTTCGAACATGCGAACCCATTACAAGAAATGTACGGTCGCTGATCCTAATGACAATTCTGAGTTGCCACCTCAAAATTAG

Protein

MCEWLSYADWCDVKLLCGDRTFEAHRVVLASASTFLREILLSCHTNETPTHMMLPDFDKEAMSAVLHYIYNGEVVLQKQKMDMFLDIVKAMRIYIDYELLNPDLATDFENEYCESKTNARTISKAAISNHVLENPWRPRLPVDAKPFRRKFKESSEKLPLLNKVSEAVSDNNNNCATTPAALSNQLPVLKDEFKCNICSQVFLSDDALTTHMSRHSKTARYSCNECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSQCPKSFNQRVAYNMHVRIHTGVKPHVCDQCGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHYKKCTVADPNDNSELPPQN

Uniprot

H9ISZ7 A0A2H1UZV1 A0A2A4J371 A0A3S2NQR5 A0A194Q3A8 A0A194R2B2 + More
A0A212EV38 A0A2A3E7F8 D6WJE8 A0A0C9R9N1 A0A2H8TUV1

Pubmed

19121390 26354079 22118469 18362917 19820115

EMBL

BABH01013096 BABH01013097 BABH01013098 ODYU01000037 SOQ34127.1 NWSH01003719 + More
PCG65890.1 RSAL01000365 RVE42181.1 KQ459586 KPI97890.1 KQ460883 KPJ11390.1 AGBW02012251 OWR45349.1 KZ288345 PBC27645.1 KQ971342 EFA03685.2 GBYB01009632 JAG79399.1 GFXV01006192 MBW17997.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000053240 UP000007151 + More
UP000242457 UP000007266

PRIDE

H9ISZ7

Pfam

PF00651   BTB        + More
PF00096   zf-C2H2
PF01207   Dus

Interpro

IPR011333   SKP1/BTB/POZ_sf        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type
IPR000210   BTB/POZ_dom
IPR018517   tRNA_hU_synthase_CS
IPR035587   DUS-like_FMN-bd
IPR001269   tRNA_hU_synthase
IPR013785   Aldolase_TIM

SUPFAM

SSF54695 SSF54695 + More
SSF57667 SSF57667

Gene 3D

3.20.20.70

CDD

cd02801 DUS_like_FMN

ProteinModelPortal

H9ISZ7 A0A2H1UZV1 A0A2A4J371 A0A3S2NQR5 A0A194Q3A8 A0A194R2B2 + More
A0A212EV38 A0A2A3E7F8 D6WJE8 A0A0C9R9N1 A0A2H8TUV1

PDB

5WJQ E-value=9.18909e-37, Score=385

KEGG

101739195 no KO assigned | (RefSeq) zinc finger protein 182

GO

GO:0003676 GO:0050660 GO:0017150 GO:0005634 GO:0005515 GO:0046872 GO:0003700 GO:0005737 GO:0048869 GO:0016491 GO:0015930

Length:

428

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00297

Exp number, first 60 AAs:

0.00161

Total prob of N-in:

0.00541

outside

1 - 428

Pi

198.082123

Theta

193.784462

Tajima's D

1.034334

CLR

0.317953

CSRT

0.666816659167042

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics