HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.7	1.7	0.36	22	1	23	135	159
2	3.8	0.7	1.4	84	2	23	199	222
3	6.8	0.0	0.17	9.9	3	23	231	253
4	12.5	1.3	0.0024	0.14	3	22	261	280
5	15.9	0.6	0.0002	0.012	1	23	289	311
6	10.7	0.1	0.0094	0.57	1	23	315	338
7	6.9	0.9	0.15	9.1	2	23	346	367
8	10.4	0.4	0.012	0.69	1	23	405	432

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.36
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y C   +Cg + k+  ++ rH++ H
  KWMTBOMO12710 135 YSCLwdVCGHKTKDYNEMFRHLNYH 159
                    789999****************999 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 1.4
                    EET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                     C   dC+++F++   L  H + H
  KWMTBOMO12710 199 ICMwtDCNRKFNSIQILFDHAKLH 222
                    58888******9988888888777 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.17
                    ET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 Cp..dCgksFkrksnLkrHirtH 23 
                    C+  +Cg  F++k +L +H r+H
  KWMTBOMO12710 231 CSwaGCGAWFTTKALLGAHVRSH 253
                    888899999*************9 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.0024
                    ETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt 22 
                    C +Cg+ F ++  L+ H+r+
  KWMTBOMO12710 261 CYHCGQHFANNRKLRDHLRR 280
                    9*****************96 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 0.0002
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ Cg ++ + ++L+ H r H
  KWMTBOMO12710 289 FKCTMCGIPCATEYLLNEHARQH 311
                    8********************99 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.0094
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C+++ +++  L +H r  H
  KWMTBOMO12710 315 HVCALCDMTATSPAALAQHVRYrH 338
                    79*******************988 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.15
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C+ C ++  +k +L++H+++H
  KWMTBOMO12710 346 ACTRCAYRAVTKNDLQKHLMIH 367
                    699*****************99 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.012
                    EEETTTT....EEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCg....ksFkrksnLkrHirt.H 23 
                    y C+ C+    k+F r   L++H+ + H
  KWMTBOMO12710 405 YACHMCPedkmKVFARGNTLTSHLVKvH 432
                    88*********************98888 PP