HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.1	0.7	0.0034	0.2	2	23	189	211
2	6.5	0.7	0.2	12	1	19	216	236
3	10.9	2.2	0.0083	0.5	2	23	577	599
4	1.9	0.2	5.9	3.5e+02	1	19	604	624

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0034
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C k+F++k  Lk H +  H
  KWMTBOMO12657 189 QCNVCLKTFCDKGALKIHFSAvH 211
                    7*****************87666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.2
                    EEET..TTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrH 19 
                    +kC+  +C+++F+++ + +rH
  KWMTBOMO12657 216 HKCTveGCTMMFSSRRSRNRH 236
                    79**************99999 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.0083
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ Cgk F +   L+ H+r  H
  KWMTBOMO12657 577 RCTACGKIFQNHFTLRMHYRNdH 599
                    7*******************999 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 5.9
                    EEET..TTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrH 19 
                    ++C+  +C+  F+++ +  rH
  KWMTBOMO12657 604 HPCDvnGCDAAFPSRRSRDRH 624
                    689999*******99887777 PP