SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12657
Pre Gene Modal
BGIBMGA001408
Annotation
PREDICTED:_zinc_finger_protein_basonuclin-2-like_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.48
 

Sequence

CDS
ATGGCTAGTTACGTAACGACATGCGATGGTCTAGTTGTCGAGTGTTTACAGTGGTCGATGTGTGGCTGTGTGCGAGCGCGAGTGTCGCCTGTCCCCACCGAGCATCGATCCGCTCCGCCCAGCGCTCGCTCCTCCCACCTGCGTCCCCCGCCCCGCGCGCCGTCTCCCCCGCACACCCGCCCGCCTGCCTTTGTCGCACGCCGCCCGCGCTCGGTCACCTGTGTCGCACGTCCTCAGTCGCAAAGCGGCCGCGTCGCGCGGCACCCGCTTCGTAATTTGTGTTTTTTGTATTATGACAGTGACGTGATGGAAGGAAAAGAGTTCGGTGCGGTTCCTGGTTTGCCGGCCGGCCTGGACTATTTTATGATGCCGCGAATCAGTCAGCCCGCACCACAGTTCGACTTCAGGAAGCTCGGCGCCAGTTTCAGCGGCCGGAACGATGAGAGAAGCGAAGAGCAACGGCCGATCGAGTACCAGCCGGACCGCCGTGACCCGCCGCCGGCGCCGTGGCCTCTGGGCCTCGGGGTGCAGTTCGTCAACCCCGCGACGGGCAAGAAGAGAGTGCAGTGCAACGTGTGCCTCAAAACATTTTGCGATAAAGGTGCTCTTAAAATTCATTTTTCCGCGGTACACCTACGTGAGATGCACAAGTGTACAGTGGAGGGATGCACAATGATGTTCAGTTCGAGACGATCTAGGAACCGGCACAGTGCTAACCCGAATCCAAAGCTGCATTCGCCTCATGTGAGACGCAAGATATCAGCACACGACGGTAGGTCTGCGCAACCGTTCCCATTGCTGCCGGCTTTAGCCCGACTGCCACTACCGCCACCCGCACTCTTGCCACCCGAGCTTGCAGCGCGTCTGCCTCCACCTTTGACTGGGCCTCCGGGTCAGACACCACTTCCGCCTCGCGTGCCGCTCGACGATCTACGCAATTTTAGTGAAATCGAAAAAATGTACAGAAAGATTCCTCCATCTGAGGACGCTTCCCGAAACGTATTAGACCTGGCCAAGCTACCATCCATGCCTGAAGAGGAGTCAATCAATTACAGTGAAAACAATGATGACGTCTCTGAAGACGAGGACAAAAATAAATGTGATAACAATATCAGATCTCTTAATATTGAAAGGCACAATTATGACGACGAACCTGAAGATCTGTCCGTCAATAAAAAAAGAGACAGTGGTGATAATAAAACAGCTTTAGTTAAATCTGAAACCAGTAGTAATCGCAGTGAACCTCCCACCGCCCTGGACGATAAAGCATCTGTTCCAAATAAACGAAAACGTAAAAGCGGCAACCCTACTCGTTGCTCACAGAATAACGAATACAGTGTTTCCGACGAAGAATATCAAGGGGATCTATTTAGGAACTTGTCGACGCCTGGGTCCAGTCGGGCAGACGATGAACCTTTGTCGCTCAAAAAACAAAAACCAGAGGACTTGTTGACATTTCGGAACGGAGAGGAAATTGCTGTGGATACGGAATCGCTGACGCGAGTTAAGGCTGAAAGTGAATCGGACGATGAATCGAGCGCTCCCAGTGTTGTGCGCGAAGGCCTAAGGCTGCGTTCTGATCTATATACGCCAAGTGACAGTGGAAGTGACTTACACGCGATGGAAGAGAGACTCACAAGGGCTCGGTCACCATCGGCCAGCAGTGATCGGACCGACGAGAGGGATGTCAATGAACTTGAAATTCCCATTGATGATGAAAATCCGGACAGGTGTACAGCCTGTGGAAAAATATTTCAGAACCACTTCACTTTGCGGATGCATTATAGAAACGATCATTTAAAACTACTTCATCCATGCGATGTGAATGGATGCGATGCAGCGTTTCCGTCACGAAGGAGCCGCGATCGTCACAGTTCGAATGTTGACCTGCATCGCCGATTGCTATCTACGAATTCGCCCGACGGACGAGAACAAAGACCAGCGTTTGAAGTTAACGCTGATCTACTCAACAAATTATATGCAGACATTAAAGGACTAGCAACGACTCTAGAAAGTCTAAGATACAACGGGAACGAAGAGGCAACACAATTTCCAAGCTACGTCACGGAAACTATGAAATTCTACAGCAGGAATTTGACAGCGTTGCAAGCAGGAATGTTCCCGCGATTCGGAGATCGCAGTTTTTTTCCAGCCCCCTTTCTGATGGGTAATGGAATTCCACAAGCGGGCGGGCCGTATGGAGTGTCAGCCGGAGCTCAATCCGCTCGAGAGTCAATGTCCCCCTTGTCTGCATCCTCACCGCCAGTTATCTCGCCTGGCAGATTGGACGCAGCGAACGCCCGTCCCCGAGAAGATGCCAAACTGCTTTTTCGCGAGACTTCAGAGTCTTTTAAGAAAATGACGTCTCTGTGTGAGCGCCAGGACCAACTCTACCAGCACCACGTGCCGGTGTCATGA
Protein
MASYVTTCDGLVVECLQWSMCGCVRARVSPVPTEHRSAPPSARSSHLRPPPRAPSPPHTRPPAFVARRPRSVTCVARPQSQSGRVARHPLRNLCFLYYDSDVMEGKEFGAVPGLPAGLDYFMMPRISQPAPQFDFRKLGASFSGRNDERSEEQRPIEYQPDRRDPPPAPWPLGLGVQFVNPATGKKRVQCNVCLKTFCDKGALKIHFSAVHLREMHKCTVEGCTMMFSSRRSRNRHSANPNPKLHSPHVRRKISAHDGRSAQPFPLLPALARLPLPPPALLPPELAARLPPPLTGPPGQTPLPPRVPLDDLRNFSEIEKMYRKIPPSEDASRNVLDLAKLPSMPEEESINYSENNDDVSEDEDKNKCDNNIRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTRVKAESESDDESSAPSVVREGLRLRSDLYTPSDSGSDLHAMEERLTRARSPSASSDRTDERDVNELEIPIDDENPDRCTACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVNADLLNKLYADIKGLATTLESLRYNGNEEATQFPSYVTETMKFYSRNLTALQAGMFPRFGDRSFFPAPFLMGNGIPQAGGPYGVSAGAQSARESMSPLSASSPPVISPGRLDAANARPREDAKLLFRETSESFKKMTSLCERQDQLYQHHVPVS

Summary

Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR040436   Disconnected-like       
SUPFAM
SSF57667   SSF57667       

Ontologies

Topology

Length:
805
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06623
Exp number, first 60 AAs:
0.00079
Total prob of N-in:
0.00036
outside
1  -  805
 
 

Population Genetic Test Statistics

Pi
14.29816
Theta
11.562597
Tajima's D
0.637536
CLR
3.813866
CSRT
0.568821558922054
Interpretation
Uncertain
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