HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	19.7	0.8	1.3e-05	0.00076	1	23	115	139
2	11.6	0.5	0.0048	0.29	1	23	145	169
3	16.9	0.5	0.0001	0.006	1	23	175	199
4	20.0	1.1	1e-05	0.00061	1	23	204	228
5	19.0	2.8	2.1e-05	0.0013	1	23	234	258

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-05
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+C+  +C +++++  nL++H++tH
  KWMTBOMO13419 115 YRCEydGCERTYSTVGNLRTHMKTH 139
                    99**********************9 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0048
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    +kCp   C k F ++++Lk H r H
  KWMTBOMO13419 145 FKCPmqSCEKAFLTSYSLKIHVRAH 169
                    89*********************98 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 0.0001
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    + C+   Cgk F++ + L++H+r H
  KWMTBOMO13419 175 FICDnsSCGKAFNTLYRLRAHQRLH 199
                    6788889*****************9 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 1e-05
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    + C+  +C k F++ s+Lk+HirtH
  KWMTBOMO13419 204 FNCKsdGCAKYFTTLSDLKKHIRTH 228
                    7899********************9 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 2.1e-05
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    ykC   +C+ksF  +++Lk+H rtH
  KWMTBOMO13419 234 YKCRmdGCDKSFIASHHLKAHGRTH 258
                    99**********************9 PP