SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12619
Pre Gene Modal
BGIBMGA001422
Annotation
Uncharacterized_protein_OBRU01_22450_[Operophtera_brumata]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.61
 

Sequence

CDS
ATGTTTTGTGATAGCAGCGGTCCGCATCTCGAGGAAGCCCTCCTCAATGACCAACTTCTGTTCGAGTACTCGCCGGCCGAAAGTCTAATAAACTTCGAACTCCCGTCCTTCGACTCGGACACCAGCGACTGGCAGCTCAGTGATTTGGATTTCAATTGTGACGGTTTCGTAATCGGCGCCGACGATCCAAACAAGGAAGAGAACAATCTTGTCGACGACTTGCCAGTTTTTGATTTTGAAGATTTAGACAAGAGCATTATCGACGAATATTTATTGGAAGCGTTAAGCAGCGATCTTTCTAACGACGCTCAGCTTTCAAATACGGAATCAATACCGAATATTAGTTCAGTTTATGCACTAGAAACTCATGATTATACCTCAATAGAAAGCGAATGGCCGAGACCGCGAGAAAAAGCAACTCCAGAAGTCAAAGTTCGGTTCGGCGAACCCAAATATTGTCCGGAAGTCGGCGCTTTTCGATGTCCCGTTGAAGAATGCAGCAAACTTTATGCAAAAGCGTCACATGTTCGAGCCCATTTACGGAGACACAGCGGTGAAAAGCCTTACCGCTGCACGTGGGGTGACTGTTCGTGGCGGTTCGCGCGCTCAGATGAACTAGCTCGACATCGTCGCAGTCACTCAGGGGACAAACCTTACAGATGTGTTGAATGCGAAAAGAGATTTGCTAGATCTGACCACCTCGCCAAGCATGGTCGTGTGCACGCACGTCGCGCCGCCGCTGCAGCCGCCGCTGCTGCAAGATGCGCTGGGACCACACCACACACTCACCGTAGGAGTTCAAGGAGTATTCTACTTTTGTGA
Protein
MFCDSSGPHLEEALLNDQLLFEYSPAESLINFELPSFDSDTSDWQLSDLDFNCDGFVIGADDPNKEENNLVDDLPVFDFEDLDKSIIDEYLLEALSSDLSNDAQLSNTESIPNISSVYALETHDYTSIESEWPRPREKATPEVKVRFGEPKYCPEVGAFRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVECEKRFARSDHLAKHGRVHARRAAAAAAAAARCAGTTPHTHRRSSRSILLL

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667       
PDB
2EBT     E-value=1.55772e-24,     Score=278

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0009
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00732
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
188.01432
Theta
195.199403
Tajima's D
-0.117803
CLR
0.411025
CSRT
0.339983000849958
Interpretation
Uncertain
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