Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO12108 | NF-YC | 1.4e-65 | 1.7e-65 | 1 | + View |
HMM length of domain: 273 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 221.1 6.1 4e-69 1.7e-65 9 164 29 181 Alignments for each domain: == domain 1 score: 221.1 bits; conditional E-value: 4e-69 NF-YC 9 aasssdaqqslqsfwprvmeeirnltvkdfrvqelplarikkimkldedvkmisaeapvlfakaaqifiteltlrawihtednkrrtlqrndiama 104 +s+ aqq+lq fw +v+e+i+++ df+ q lplarikkimklde+vkmisaeapvlfakaa+ifi eltlraw hte+nkrrtlqrndia a KWMTBOMO12108 29 ESSAEAAQQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIATA 124 4556679***************************************************************************************** PP NF-YC 105 itkfdqfdflidivprdelkppkrqee.vrqsvtpaepvqyyftlaqqpaavqvqgqqqgq 164 i k dqfdflidivpr e+kp k + + r++ qyy+ laqq a + q q KWMTBOMO12108 125 ILKSDQFDFLIDIVPRHEVKPTKPRYDaARKAP---STDQYYLQLAQQHQAALQN-SSQPQ 181 **********************96655045443...345*********9775433.33333 PP |
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