Silkworm Genome Informatics Database

Gene

KWMTBOMO12108

Annotation

nuclear_Y/CCAAT-box_binding_factor_C_subunit_NF/YC_[Bombyx_mori]

Location

Bomo_Chr20(+):7674305-7683919 View in EpiBrowser

Transcription factor

NF-YC

Location in the cell

Nuclear Reliability : 2.116

CDS

ATGTCCATGTGCTTCTTTGTGCCTGCCGAACAAACAACGACGGTTACCACGTCCGAAGAAGTGGACGCTGATGTTGCCGGTGAGGAGTCCTCCGCTGAGGCGGCGCAGCAAACCCTCCAGCAGTTCTGGGACAAAGTCTTAGAGGACATACAGAAAGTTAATTCCGAAGACTTCAAGACCCAAGCTTTGCCGTTGGCTCGCATCAAGAAGATCATGAAACTAGACGAGGAGGTGAAGATGATATCAGCAGAGGCACCGGTCTTATTCGCGAAGGCTGCTGAGATTTTTATACACGAGCTAACGTTGCGAGCCTGGTCGCATACGGAGGAAAATAAAAGGCGGACTCTGCAGCGCAACGACATAGCGACAGCTATATTGAAATCGGATCAGTTCGATTTCCTGATCGACATAGTGCCGCGGCATGAAGTCAAGCCGACGAAACCGCGTTACGACGCCGCCAGGAAAGCCCCCAGCACGGATCAGTACTACCTCCAGTTGGCGCAGCAGCATCAGGCGGCCCTACAGAACAGTTCGCAGCCTCAAATCGTGATACAGCCCTGCGCTCAAGTGGTACAGGTAAGAGACACATTACCACCCGAATATTTCTTATAA

Protein

MSMCFFVPAEQTTTVTTSEEVDADVAGEESSAEAAQQTLQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDFLIDIVPRHEVKPTKPRYDAARKAPSTDQYYLQLAQQHQAALQNSSQPQIVIQPCAQVVQVRDTLPPEYFL

Uniprot

Q2F5X7 A0A2A4JFZ4 A0A2A4JEI3 A0A0N1IQA7 A0A2H1WRV3 A0A2W1BFA6 + More
A0A194QBI5 A0A212EMK9 A0A1E1WQI7 A0A2A3EH11 A0A088AT10 A0A0C9RHS0 A0A158N9X2 A0A026W0I2 E2BQ88 E2AE53 A0A0L7QV15 A0A310SQ22 F4WS62 A0A1B6E070

Pubmed

26354079 28756777 22118469 21347285 24508170 20798317 + More
21719571

EMBL

DQ311296 ABD36240.1 NWSH01001664 PCG70484.1 PCG70485.1 KQ459838 + More
KPJ19724.1 ODYU01010584 SOQ55800.1 KZ150305 PZC71516.1 KQ459460 KPJ00796.1 AGBW02013827 OWR42691.1 GDQN01001820 JAT89234.1 KZ288254 PBC30744.1 GBYB01012742 JAG82509.1 ADTU01009807 ADTU01009808 KK107512 EZA49475.1 GL449698 EFN82142.1 GL438827 EFN68286.1 KQ414731 KOC62394.1 KQ760241 OAD61283.1 GL888300 EGI62956.1 GEDC01006011 JAS31287.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151 UP000242457 UP000005203 + More
UP000005205 UP000053097 UP000008237 UP000000311 UP000053825 UP000007755

PRIDE

Q2F5X7

Pfam

PF00808 CBFD_NFYB_HMF

Interpro

IPR003958   CBFA_NFYB_domain        + More
IPR009072   Histone-fold
IPR027170   HAP5_su

SUPFAM

SSF47113 SSF47113

Gene 3D

1.10.20.10

ProteinModelPortal

Q2F5X7 A0A2A4JFZ4 A0A2A4JEI3 A0A0N1IQA7 A0A2H1WRV3 A0A2W1BFA6 + More
A0A194QBI5 A0A212EMK9 A0A1E1WQI7 A0A2A3EH11 A0A088AT10 A0A0C9RHS0 A0A158N9X2 A0A026W0I2 E2BQ88 E2AE53 A0A0L7QV15 A0A310SQ22 F4WS62 A0A1B6E070

PDB

1N1J E-value=1.50941e-33, Score=353

KEGG

100101155 K08066 nuclear transcription factor Y, gamma | (RefSeq) nuclear Y/CCAAT-box binding factor C subunit

GO

GO:0016602 GO:0046982 GO:0003700 GO:0005515 GO:0008270 GO:0019001 GO:0031683 GO:0007165 GO:0005525 GO:0008033 GO:0003676 GO:0016787

PANTHER

PTHR10252:SF8

Subcellular location

Nucleus

Length:

203

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00233

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01923

outside

1 - 203

Pi

28.014217

Theta

32.070757

Tajima's D

0.416121

CLR

20.015767

CSRT

0.495825208739563

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics