HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.4	1.2	3.3e-05	0.002	1	23	64	86
2	12.1	1.0	0.0032	0.19	1	23	600	624
3	13.2	1.5	0.0015	0.087	2	23	1058	1080
4	9.7	2.2	0.019	1.1	1	23	1088	1111

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.3e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C+ C + F+++++L++H+  H
  KWMTBOMO12077 64 HRCHTCEEDFSDWDELEKHLIQH 86
                   79******************988 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.0032
                    EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                    ++C++C+ +F++ s+L +H r   H
  KWMTBOMO12077 600 HTCDVCNTRFTDISLLDNHKRLtgH 624
                    79*****************997555 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.0015
                     EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirt.H 23  
                      C++C+k+F +  +L +H+   H
  KWMTBOMO12077 1058 SCKICKKMFMNHNSLAVHMTNaH 1080
                     6******************9888 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.019
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     +kC++C+ s++   +L++H r+ H
  KWMTBOMO12077 1088 FKCDECPSSYPKLLQLQHHKRVfH 1111
                     8********************999 PP