Silkworm Genome Informatics Database

Gene

KWMTBOMO12077

Pre Gene Modal

BGIBMGA004284

Annotation

putative_DNA-directed_RNA_polymerase_II_largest_subunit_[Danaus_plexippus]

Location

Bomo_Chr20(-):6844921-6856436 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.174

CDS

ATGGCAACAAAGCATGTTACTGATTTTCCATCGCCACCACCAAATGATGAGTCAGATGATAGTGAAGATCAAGATTCGGCCGATTCCAGTTCTCAACAGGCTGAAGGTCCAAAGGTGGCCAGTAATGTCGCAGAGCTACTGAAAAGACTCCAGTCTACTGGTGCTCTTATAAAGAAACCTAAACAAGAGCATAGGTGTCACACTTGCGAGGAAGATTTTTCCGATTGGGACGAGCTAGAGAAGCACCTAATCCAACACGTTTCCCTGCCGTCTGTCGTGATTGACAAGCTGCCTTCCGACGACGAGTATAGCCCGCCCTCTGGGGACGAAAACTGGTCCGATGAAGAAGAGGAACCCCCAGCACCATTTAAAGCTACCCCTCAAAAGCTACCATCGAATATTTCTCAAATACTCAAGAATACGGGTATTATTATCAAGAAAACTGACACAAATACTAGTTCACATTCAGCGTTGAACAAACTGAGTGGACTAGGTTTTACAATAAAGAAGAATAGCACGCCAATAAAGCAAGAGCCCGGTTCCAATGTTGCCCCGAAGAGCGATGACCTGCAAAAAATTAACAACCGCGGTCAAATCAAACTAAAATTGAAATTTGGAAACAACGGTGATTCTGTTAGAGTCGTGAACGGTTTAAAGGACTTCAAGACTTCAGATGACGAAGACGAGGGAAGTGCAAATGAAGACAGCAGAGGTGATAACGACGAAGGACAAGAAGGCAAGCCAGGTGAGCAGGAAGGCTCGGCCGCGGAGAATGATTCCGGCGACGAACAACCCGACAACGCTAAGGGCCAAGACAGCGACGATTCGGATGGTCTAGTTGAAAAAGCAATTGCTAAGGCTAAGATTTCAACTGCGTTAAAAAGACTACAGCAGAACGCTACAGCAAAAGCTGAAACAGTACCGGCCGCCCCAATAAAAACAGTTCCTATGCAAATAAAACCATCAGGTCGACCAGTAATAAAACAAACGCCTAAAAGAGGCGATAATCTACCGATGTTGGCTAAAATAGCCCCTCAACAATCAATAGAAACATCTGCACCGGTAACCGTGGCATCGGTTCGAACGCCCACTCCCGAGAAGCGTCCGTCACAAGAACAAACCATGGAGAACGTGAAGGTGAAACAAGAGGTCGAAAGCGGCGACCATCAACCACAACCGAGTCTTCCTTTATTCTCTGGTCAGATAAAGACAGAGAGAAGCGTCACTCCTTCTCTTGACAGGAACAATTGTTCCACACCATTAATAGCAATTGTCAAAGACGATCCCGACGGATCCTCAAACCAGCCCTCTCAACCGATATTTTCGGACAGTAAAACAGCTCCCACAAGTGCGACGGTGCCACTACTTCCCGTCACGAAAATAGAAGACACTGGACCAACGATTATAGAGATCAATGGCGATTCTAATGACGAGGACGACGATTGTTGTGTCGTTTCAACGACGCCGGCGCCCGATATTAAACCGATCGTACCTAAAATCGAAAACGCACCGCTCGTGTCCTGTCCCTCGATCTCGCAATCGTTTCAAAGCTCTCAGCCCAGTTACAATAACTCTGGGCATTTATCGCCGAGAATAACAACGGCTCCGTCTTTAGAGAAACAACACAATTTCAACTGGAACGCGCCGGATTCGAAACCGCACCTGAACTCCATGAACATCTTGGATAATACGGCAGATGAAATATTTCAAAGCTTAATAGCTAATTCTGCGAAGAAGGAAAACCTCTCTTTGTCGGAGGCCAGTGAATACGTTTCGCTGGACACACTTGGACCCCAACACACTTGCGATGTCTGCAACACCAGGTTCACGGATATATCGCTGCTTGACAACCACAAAAGATTGACAGGACACACGAGAAGCCTTATCACTCCCTCTTCGTCGACATTGATGCCGTATGCTCAAAATTCCAATATATTATCTAGTTTACTACCTGTGAAACATTTGGCCGATCAAGTCGGAAAACTGTCAAGTATAGGAGGCAGCGGTCCCGGGTTCACGCATCAGCAAAACGTTATGATTAATATACAAGCCTATCCTGGAGGAAATGGTGTAATGGGACAAGCGCCTCCGCTATATAATTATTCAAGTGGACAAACTATGGGGTCGCCGTTTTCGCAGACTTCTAGTAACATGTACAGCGCGCCCGGGCCGCAGCAGATGCCCGGCCAATACCCTGGTCAGAACACTTACATGGGTCAGCAGGGCTACGGACAATTCCCCACTTCGATGCCGAATTCGACGTATCCGGGTACAAAGACAGAAAATTCATATTCTGCTGCATCTTCCCAATATTCTACGGCCTCGCCACTTCAAAGCATGCAACAGGCTGTTTACGGTCAATCGTCTGGTTTAATGAATACACAAGGTCAAATGGGTCCTCCAGGATCCATTCCATACATCCCGTCGTCAAGTCCGAGCGGTTCGATGAAACCGCCTCAAAATACCGCCATTAAGATACAAAATGTACAGACGTTCCCTGCTAATCAGATGATGGGTATGTCTGGTCAGGCAGGGTCAACAGAAATGCCACCGCCACAGCAACCGCAGCATCAGATGCAACAGCAGCAGCAACCCACGCCCGGGCATGCGATAAACCAAATGCCACCGCCAGGTCAAATAAGGATGGCTCCGGGCGCCCAATTAGTAAATATGCGACCACGAATGCCCACCGTTCGTGGTCAGAGACCTTCTATTCGACCAGGAATACAAGTTCACGGACAAGTACGAGGCGTAAAGCCTGGCACACGGATGCCGTTGAAAAGACCTGGAAACATGGGTCCCGCGCCTACCATGAAAAAGCGGCCTAACATGCTACTACCTGACAAACATGACAATGAGGACTGCCAAGTAATGGCGATGCAGAAACAGCGCGAAGGCCTACCCATGATCCACAGCGTACAGGGCGCGAAAGATAAAATCGGCAGCCAAATTTCTATAACCAAGAAAACTGTGAACAAAGAGGCTAATGCAATGGCGAACGTGCTGGCATCTCGCGGTATTAGCATAAAACAGAAACAGAAGAGTAGATCGCCGACACCCGAGCGACCTATACCGCATATTCCGAACTTAGGGGCCGGGGTCAGCATCAAGCATACCTCTAAAACGAGCAGCTTTTCCATTCCCGAAGCGAAAGTCGGAGGCGGAATGCTCTCGTGTAAGATCTGCAAGAAAATGTTCATGAACCACAACTCTTTAGCGGTGCACATGACGAACGCGCATCCCCAATGTAAATTGCCGATATTCAAGTGTGACGAGTGTCCGTCGTCGTATCCAAAACTCTTGCAATTGCAGCATCACAAACGGGTGTTCCACAACGTGACAGGCCCGAACCGGGAGGTCGGGATACCGGTCGTGGATCTGTCACAGGAGGACAATCTGAAGCGCTTGGGCAACTTAGGGATATACAGTTTCATACCGTTAGCTAATAGGGAACAGGACAATGGTTGTTTCGGTATACCTGTTGTGTCCGTGCACAATATGCAAAACGGTTTGACGAGTAGCCTTCAGGCGTTAGGTGCGGATGGTCTTTTGAGTCTAGGCCCGCTGAAGCCGTTGCCCAACGCGTAG

Protein

MATKHVTDFPSPPPNDESDDSEDQDSADSSSQQAEGPKVASNVAELLKRLQSTGALIKKPKQEHRCHTCEEDFSDWDELEKHLIQHVSLPSVVIDKLPSDDEYSPPSGDENWSDEEEEPPAPFKATPQKLPSNISQILKNTGIIIKKTDTNTSSHSALNKLSGLGFTIKKNSTPIKQEPGSNVAPKSDDLQKINNRGQIKLKLKFGNNGDSVRVVNGLKDFKTSDDEDEGSANEDSRGDNDEGQEGKPGEQEGSAAENDSGDEQPDNAKGQDSDDSDGLVEKAIAKAKISTALKRLQQNATAKAETVPAAPIKTVPMQIKPSGRPVIKQTPKRGDNLPMLAKIAPQQSIETSAPVTVASVRTPTPEKRPSQEQTMENVKVKQEVESGDHQPQPSLPLFSGQIKTERSVTPSLDRNNCSTPLIAIVKDDPDGSSNQPSQPIFSDSKTAPTSATVPLLPVTKIEDTGPTIIEINGDSNDEDDDCCVVSTTPAPDIKPIVPKIENAPLVSCPSISQSFQSSQPSYNNSGHLSPRITTAPSLEKQHNFNWNAPDSKPHLNSMNILDNTADEIFQSLIANSAKKENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHTRSLITPSSSTLMPYAQNSNILSSLLPVKHLADQVGKLSSIGGSGPGFTHQQNVMINIQAYPGGNGVMGQAPPLYNYSSGQTMGSPFSQTSSNMYSAPGPQQMPGQYPGQNTYMGQQGYGQFPTSMPNSTYPGTKTENSYSAASSQYSTASPLQSMQQAVYGQSSGLMNTQGQMGPPGSIPYIPSSSPSGSMKPPQNTAIKIQNVQTFPANQMMGMSGQAGSTEMPPPQQPQHQMQQQQQPTPGHAINQMPPPGQIRMAPGAQLVNMRPRMPTVRGQRPSIRPGIQVHGQVRGVKPGTRMPLKRPGNMGPAPTMKKRPNMLLPDKHDNEDCQVMAMQKQREGLPMIHSVQGAKDKIGSQISITKKTVNKEANAMANVLASRGISIKQKQKSRSPTPERPIPHIPNLGAGVSIKHTSKTSSFSIPEAKVGGGMLSCKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKRVFHNVTGPNREVGIPVVDLSQEDNLKRLGNLGIYSFIPLANREQDNGCFGIPVVSVHNMQNGLTSSLQALGADGLLSLGPLKPLPNA

Uniprot

H9J445 A0A2A4J9Y0 A0A2W1BF97 A0A2H1VN10 A0A212EMD5 A0A0L7LTI2 + More
A0A194Q633 A0A194QQM8

Pubmed

19121390 28756777 22118469 26227816 26354079

EMBL

BABH01032597 NWSH01002482 PCG68203.1 KZ150194 PZC72354.1 ODYU01003437 + More
SOQ42219.1 AGBW02013852 OWR42652.1 JTDY01000115 KOB78770.1 KQ459460 KPJ00824.1 KQ461181 KPJ07654.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000037510 UP000053268 UP000053240 + More

PRIDE

H9J445

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J445 A0A2A4J9Y0 A0A2W1BF97 A0A2H1VN10 A0A212EMD5 A0A0L7LTI2 + More
A0A194Q633 A0A194QQM8

KEGG

101739729 no KO assigned | (RefSeq) bromodomain-containing protein 4B-like

GO

GO:0003676 GO:0003899 GO:0046872 GO:0008270 GO:0003743 GO:0005737 GO:0006432 GO:0000049 GO:0000287 GO:0008033 GO:0016787

Length:

1195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00043

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1195

Pi

234.008105

Theta

215.230652

Tajima's D

0.01641

CLR

1.156956

CSRT

0.371631418429079

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics