HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	13.9	2.8	0.00087	0.052	1	23	314	337
2	2.1	5.9	4.8	2.9e+02	2	23	345	366
3	15.0	6.2	0.00041	0.024	2	23	398	419
4	7.3	0.3	0.11	6.6	1	23	423	446
5	7.9	0.4	0.07	4.2	2	20	465	483
6	11.3	5.1	0.0061	0.36	2	23	522	544
7	6.0	0.1	0.28	17	1	23	556	577
8	22.0	1.0	2.3e-06	0.00014	1	23	583	605
9	14.2	2.1	0.00071	0.043	1	23	611	634

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00087
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C k F+ +++L rH +  H
  KWMTBOMO11842 314 FRCYQCYKGFSKQDMLDRHTKLrH 337
                    89******************9988 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 4.8
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C+++Fk k  L+rH+ +H
  KWMTBOMO11842 345 ECKFCHMRFKWKCFLNRHMPRH 366
                    6*****************9555 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 0.00041
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++Cg+ F+++s + +H+rtH
  KWMTBOMO11842 398 KCKHCGEEFRHSSTYYTHLRTH 419
                    7********************9 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.11
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ Cg sF +   L  H    H
  KWMTBOMO11842 423 YLCTLCGVSFVSEAGLHLHKLAkH 446
                    66****************987666 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.07
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C+ C+ +F +k+ ++ H+
  KWMTBOMO11842 465 YCERCDIKFETKEAFEEHL 483
                    6*****************7 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.0061
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cgk+F+++   ++H  + H
  KWMTBOMO11842 522 TCSYCGKVFPTQAACMKHHHSeH 544
                    8*****************98878 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.28
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg s   + + ++H++tH
  KWMTBOMO11842 556 HICEICGVSL-APVSIQSHLNTH 577
                    57*****555.555555555555 PP

  == domain 8  score: 22.0 bits;  conditional E-value: 2.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg +F++ks+ +rH+ tH
  KWMTBOMO11842 583 YTCTTCGVVFNSKSSWTRHQLTH 605
                    9*********************9 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 0.00071
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ C+k+F+++ + k H++t H
  KWMTBOMO11842 611 FACSLCDKRFTQSNSVKLHYKTfH 634
                    78********************99 PP