HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.3	0.8	0.5	30	1	23	8	30
2	16.8	3.2	0.00011	0.0065	2	23	36	57
3	13.6	0.5	0.0011	0.067	1	23	61	84
4	6.4	0.4	0.22	13	2	20	101	119

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.5
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C  C+ ++ + s +  H   H
  KWMTBOMO11840  8 YECLRCDLVCAQESTMLYHEEYH 30
                   89*************99997766 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 0.00011
                   EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirtH 23
                   kC  C+  F++ s + +H+rtH
  KWMTBOMO11840 36 KCVRCDLEFRHASTYYSHMRTH 57
                   7********************9 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 0.0011
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   ++C  Cg s+ ++  L++H++  H
  KWMTBOMO11840 61 HVCVSCGASYVSRAGLQQHRKLkH 84
                   79******************9988 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.22
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C+ C+ +F ++  +  H+
  KWMTBOMO11840 101 YCETCDVTFESRRAYDEHL 119
                    5**********99998886 PP