Gene

KWMTBOMO11840

Annotation

PREDICTED:_zinc_finger_protein_808-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr20(-):1615607-1620800      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.845

CDS

ATGAGACAGCACTACACCAAATACGAGTGTCTGAGGTGTGACCTCGTGTGCGCGCAAGAGAGCACGATGCTGTATCACGAAGAATACCATAGTGGCGTGACAAGGAAATGCGTACGCTGCGACTTGGAGTTCAGACACGCGTCTACGTACTACTCGCACATGCGCACGCACCGCAGCGCGCACGTGTGCGTGTCGTGCGGCGCCTCGTACGTGAGCCGCGCCGGCCTGCAGCAGCACAGGAAGCTCAAGCACGTGCACGACGACGCGGACAGCCTCGCCGACGAGGACCGGGTCGCTTCGTACTGCGAAACGTGCGATGTCACGTTCGAATCCCGGCGGGCTTACGACGAACATCTATTTCACTCAGCCAAGCATTGTGACGACCAGTTGCAAGAGAAAAACGAAGCCATCGCTGTGTCAAGAAAGACTCTAAGCAAATCGTATAAGGCTAAAATGATCCCGATTCTAAAAAGACGGTGA

Protein

MRQHYTKYECLRCDLVCAQESTMLYHEEYHSGVTRKCVRCDLEFRHASTYYSHMRTHRSAHVCVSCGASYVSRAGLQQHRKLKHVHDDADSLADEDRVASYCETCDVTFESRRAYDEHLFHSAKHCDDQLQEKNEAIAVSRKTLSKSYKAKMIPILKRR

Uniprot

A0A2A4K4E2   A0A2A4K524   A0A0N1IQ78   A0A2H1WD86   A0A2W1BWP0   A0A2A4K5S6   + More
A0A3S2NNE3   A0A212F6M7   A0A2H1V264   A0A3S2P4F7   A0A2W1BQ38   A0A0N1IHJ8   A0A2W1BV76   A0A0N1ING9   H9J4J0   A0A194QBF8   A0A2A4K8P9   A0A2W1BCB5   A0A2A4JTI5   A0A3S2LJV4   A0A194QQF7   H9IWW1   A0A194QAM2   A0A194Q527   A0A2W1BI44   A0A194QVL0   A0A212ET42   A0A3S2TJB5   H9JCD1   S4P6V7   A0A2A4JVY9   S4NXI2   A0A194Q632   S4PAC6   S4P6A2   A0A2H1VJG1   A0A212F5H6   A0A212EJ35   A0A2A4JSJ1   A0A2A4JVX9   A0A2A4JW96   A0A2H1W3X2   A0A1E1VZJ9   A0A2W1B1S3   A0A194QHT0   A0A2A4K955   A0A1E1WHH4   A0A0N1PJ21   A0A194QRI4   A0A2W1B689   A0A194QCN3   A0A2H1V5K9   A0A2H1WDF0   A0A2A4J6S1   A0A0L7LEH0   A0A194Q602   L7MDN9   A0A232F5R2   A0A0N1PIR8   K7JU69   A0A2A4JMU5   A0A0N1PHI2   A0A2Y9LJ83   S4PA08   A0A0N1IE84   W4XKC1   A0A194R1D7  

Pubmed

26354079    28756777    22118469    19121390    23622113    26227816    + More
25576852    28648823    20075255   

EMBL

NWSH01000141    PCG79125.1    PCG79126.1    KQ459718    KPJ20255.1    ODYU01007868    + More
SOQ51021.1    KZ149937    PZC77096.1    PCG79123.1    RSAL01000025    RVE52097.1    AGBW02009994    OWR49387.1    ODYU01000342    SOQ34930.1    RVE52099.1    PZC77098.1    LADI01012895    KPJ20750.1    PZC77097.1    KQ458408    KPJ05910.1    BABH01021778    KQ459460    KPJ00766.1    NWSH01000027    PCG80587.1    KZ150504    PZC70656.1    NWSH01000652    PCG75008.1    RSAL01000087    RVE48251.1    KQ461181    KPJ07589.1    BABH01021020    BABH01021021    BABH01021022    BABH01021023    KQ459463    KPJ00466.1    KPJ00464.1    KZ150333    PZC71343.1    KPJ07591.1    AGBW02012649    OWR44658.1    RSAL01000098    RVE47648.1    BABH01031546    GAIX01004849    JAA87711.1    NWSH01000508    PCG75979.1    GAIX01012157    JAA80403.1    KPJ00465.1    GAIX01006447    JAA86113.1    GAIX01005149    JAA87411.1    ODYU01002887    SOQ40936.1    AGBW02010195    OWR48987.1    AGBW02014523    OWR41513.1    PCG75007.1    PCG75969.1    PCG75968.1    ODYU01006174    SOQ47799.1    GDQN01010894    JAT80160.1    KZ150681    PZC70388.1    KQ458981    KPJ04495.1    PCG80589.1    GDQN01004610    JAT86444.1    KQ459941    KPJ19167.1    KPJ07590.1    KZ150686    PZC70385.1    KQ459193    KPJ03179.1    ODYU01000804    SOQ36135.1    ODYU01007811    SOQ50892.1    NWSH01002958    PCG67224.1    JTDY01001433    KOB73867.1    KQ459582    KPI98835.1    GACK01002688    JAA62346.1    NNAY01000861    OXU26166.1    KQ460140    KPJ17512.1    AAZX01002659    AAZX01018230    NWSH01000953    PCG73395.1    KQ459838    KPJ19752.1    GAIX01005246    JAA87314.1    KQ458725    KPJ05381.1    AAGJ04087397    KQ460878    KPJ11608.1   

Proteomes

UP000218220    UP000053240    UP000283053    UP000007151    UP000053268    UP000005204    + More
UP000037510    UP000215335    UP000002358    UP000248483    UP000007110   

PRIDE

H9J4J0    H9IWW1    H9JCD1   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP
PF12171   zf-C2H2_jaz
PF03820   Mtc
PF07653   SH3_2
PF14604   SH3_9
PF13815   Dzip-like_N
PF04114   Gaa1

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR006612   THAP_Znf       
IPR038441   THAP_Znf_sf       
IPR022755   Znf_C2H2_jaz       
IPR004686   Mtc       
IPR001452   SH3_domain       
IPR035755   RIM-BP_SH3_3       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR040325   RIMBP1/2/3       
IPR036116   FN3_sf       
IPR035753   RIM-BP_SH3_2       
IPR036028   SH3-like_dom_sf       
IPR032714   DZIP1_N       
IPR007246   Gaa1       

SUPFAM

SSF57667   SSF57667        + More
SSF49265   SSF49265       
SSF50044   SSF50044       

Gene 3D

3.30.40.180     2.60.40.10    

CDD

cd12012  SH3_RIM-BP_2
cd00063  FN3
cd12013  SH3_RIM-BP_3

ProteinModelPortal

A0A2A4K4E2   A0A2A4K524   A0A0N1IQ78   A0A2H1WD86   A0A2W1BWP0   A0A2A4K5S6   + More
A0A3S2NNE3   A0A212F6M7   A0A2H1V264   A0A3S2P4F7   A0A2W1BQ38   A0A0N1IHJ8   A0A2W1BV76   A0A0N1ING9   H9J4J0   A0A194QBF8   A0A2A4K8P9   A0A2W1BCB5   A0A2A4JTI5   A0A3S2LJV4   A0A194QQF7   H9IWW1   A0A194QAM2   A0A194Q527   A0A2W1BI44   A0A194QVL0   A0A212ET42   A0A3S2TJB5   H9JCD1   S4P6V7   A0A2A4JVY9   S4NXI2   A0A194Q632   S4PAC6   S4P6A2   A0A2H1VJG1   A0A212F5H6   A0A212EJ35   A0A2A4JSJ1   A0A2A4JVX9   A0A2A4JW96   A0A2H1W3X2   A0A1E1VZJ9   A0A2W1B1S3   A0A194QHT0   A0A2A4K955   A0A1E1WHH4   A0A0N1PJ21   A0A194QRI4   A0A2W1B689   A0A194QCN3   A0A2H1V5K9   A0A2H1WDF0   A0A2A4J6S1   A0A0L7LEH0   A0A194Q602   L7MDN9   A0A232F5R2   A0A0N1PIR8   K7JU69   A0A2A4JMU5   A0A0N1PHI2   A0A2Y9LJ83   S4PA08   A0A0N1IE84   W4XKC1   A0A194R1D7  

PDB

5V3G     E-value=0.0515655,     Score=80

KEGG

101741901    no KO assigned | (RefSeq) oocyte zinc finger protein XlCOF6-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003677   GO:0046872   GO:0016020   GO:0015075   GO:0016021   GO:0042765   GO:0007264   GO:0022857   GO:0006810   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11153   PTHR14234   PTHR13304  

Length:

159

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03551

Exp number, first 60 AAs:

0.00484

Total prob of N-in:

0.75517

inside

1  -  159

 

 

Pi

196.029373

Theta

164.117356

Tajima's D

0.851497

CLR

0.206471

CSRT

0.619869006549672

Interpretation

Uncertain