HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	17.7	0.2	5.6e-05	0.0033	1	19	3	21
2	15.0	1.8	0.00041	0.024	1	23	31	53
3	22.9	1.9	1.3e-06	7.7e-05	1	23	59	81
4	16.8	0.4	0.00011	0.0065	1	23	87	109
5	22.7	0.2	1.5e-06	8.8e-05	2	23	116	137
6	26.1	0.7	1.2e-07	7.2e-06	1	23	143	165
7	18.4	1.6	3.3e-05	0.002	1	23	171	193
8	13.9	1.4	0.00087	0.052	5	23	202	220
9	20.9	5.2	5.5e-06	0.00033	1	23	226	249

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.6e-05
                   EEETTTTEEESSHHHHHHH CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrH 19
                   ++C++Cgk  ++ksnLk+H
  KWMTBOMO04103  3 HQCDVCGKILSTKSNLKAH 21
                   79***************** PP

  == domain 2  score: 15.0 bits;  conditional E-value: 0.00041
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ykC++C+ +F+  s L +H ++H
  KWMTBOMO04103 31 YKCTECPATFRGHSALFQHKKVH 53
                   9********************99 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 1.3e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y C++C+k F+r+  L++Hir+H
  KWMTBOMO04103 59 YHCEYCPKQFSRRTGLVNHIRVH 81
                   89********************9 PP

  == domain 4  score: 16.8 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C k F ++ +L  H ++H
  KWMTBOMO04103  87 YSCGICFKNFVQSAQLSIHVKRH 109
                    89********************9 PP

  == domain 5  score: 22.7 bits;  conditional E-value: 1.5e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C dCgk F+ ks+L++H+r+H
  KWMTBOMO04103 116 LCQDCGKGFPIKSDLRVHQRIH 137
                    5********************9 PP

  == domain 6  score: 26.1 bits;  conditional E-value: 1.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+k+F ++ nL  Hir+H
  KWMTBOMO04103 143 YSCHLCTKTFATSGNLAIHIRIH 165
                    89********************9 PP

  == domain 7  score: 18.4 bits;  conditional E-value: 3.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C + F + s +++H+++H
  KWMTBOMO04103 171 YNCPVCQRGFVTCSAYNVHLKRH 193
                    89********************9 PP

  == domain 8  score: 13.9 bits;  conditional E-value: 0.00087
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    +Cgk+F ++s Lk+H+ +H
  KWMTBOMO04103 202 ECGKTFYTSSALKQHRVVH 220
                    7**************9888 PP

  == domain 9  score: 20.9 bits;  conditional E-value: 5.5e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C ++F++ s+L+rH ++ H
  KWMTBOMO04103 226 YQCKICERKFTQTSHLTRHFKRdH 249
                    9********************999 PP