HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.3	1.5	0.012	0.72	2	23	108	129
2	23.2	6.4	9.8e-07	5.8e-05	1	23	135	157
3	21.1	0.0	4.8e-06	0.00029	2	23	164	185
4	18.2	2.7	3.8e-05	0.0022	1	23	191	213
5	26.0	0.7	1.3e-07	7.8e-06	1	23	219	241
6	21.3	2.0	4.1e-06	0.00025	1	23	247	270

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.012
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C  Cgk+ +++  Lk+H+ tH
  KWMTBOMO11294 108 QCFTCGKVMSSRFRLKTHLITH 129
                    7********************9 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 9.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+C+k+F+ + nLk+H+rtH
  KWMTBOMO11294 135 FSCPHCSKCFSLSQNLKVHMRTH 157
                    89********************9 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 4.8e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cg+sF ++  L +H+r+H
  KWMTBOMO11294 164 QCSVCGESFAQSAGLAAHRRKH 185
                    8********************9 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 3.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  C+++F++  +L+ H r+H
  KWMTBOMO11294 191 YSCVLCPRRFRTVGHLQYHVRRH 213
                    89********************9 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 1.3e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C++ F ++s+Lk+H+ tH
  KWMTBOMO11294 219 YECDTCSRAFITRSDLKQHMLTH 241
                    99********************9 PP

  == domain 6  score: 21.3 bits;  conditional E-value: 4.1e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg + +r+s+LkrHi+  H
  KWMTBOMO11294 247 HVCSICGIRLTRSSHLKRHIQQiH 270
                    79******************9988 PP