Silkworm Genome Informatics Database

Gene

KWMTBOMO03366

Pre Gene Modal

BGIBMGA006395

Annotation

zerknullt_[Bombyx_mori]

Location

Bomo_Chr6(-):5296019-5298307 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.649

CDS

ATGGGCAATAATACCTTCTCTGATTGTAAAGTCGAGGTTTTATCTCCAATACCTAGTGCTTTCGTGCAAGACTACAATTCCAGAGATTCGACTGGTTTTACTATTCACGACATTCTTGGATTGCATCAACCATTCACTCAACCTCATATGCCGGATGAAACCCAAATAAGATACGATTATCAATTGTCAAACTACGAAAATGTCAATAACATCGGTCAGAATTATTGTTCTGGAACTGAAGAAGTAAGTGCGGAAGGATGTCTGACAAAAGATGATATTTTGTTCAATTCCACTTCTTCGCAAATAAACAGTCAAGTTCTTTACGATAGAGATTACGCTGATAAAGAACTTATCGAATATGAACGAAGGGGATTGATTGCGGACGCAAAGGATCACGAAAAAATTAACTTACAAGAATCTGGTTTCAACAATCAGAACTCTTCTTGGACCAACCACACGTCTTTAAGTACACCTATCGTAAGAGCCTCAACATCCATATCAGGAACAGGAATGTCATCTACATCACCACCGTTTCAAAAGGGCTTCACAAAACGAGCTAGAACTGCTTACACCAGTTCTCAGCTAGTCGAACTAGAGAACGAATTCCACCAGAATCGGTACTTATGCAGACCAAGACGCATAGAGCTGGCAAATTATTTACAACTTTCCGAACGACAAATAAAAATTTGGTTCCAAAACCGTAGAATGAAATACAAAAAGGACAATAAACATAACAAGCCATCGTCGTCTGTGGACGATAGCAGTCCTTCAAGTTCCAAGGAGCTATCTCCTAGTCAAGATCACAAGTTGAGCCATGTGCGAAGTTGCGGAGGTCACGATAGACACAGGCGATTGCTGAGCGACAGTCACGCGAGCCATCACAAAATATACACTTCAGCGAACGACAATATTACCAGACCTCCTGATTACAGTGCAATGAATTCAATGAAATCTACAATAAAAGGACAGCAGGGAACAATCGAATTGCCATCATATACACCGAATCTATCTTATTCGTCGTACTATGCTGCCGGCACGAGTGGTGCAGCTTACTCACCTCTGTCTGAAGTTTATCGGTACACTAACGATGACTCACTACCGTCGAATTCTACGTTACCGCCGCTAACATCAGATAGCTATGTTCCAAACGGAATAAATTTGAAGTTAAACGAGGACATGACAAGATTCACTTCTAATACTTCGTATTACAGTTCATTATCTAATAGTATCGTGATGCATCATCCACCAACAGATTCTTATGGATTTAATGCTATCACTTCGGTTCCGACACCTACTTATGATGAAGGCAGTTTTACTACAAGAACCTCTACTTTACCACTAAGCCAAGATTCATACTTTTCATATTTAACGTCTGCGGAAAATGCTAATCAATTAGCCTCCGCTTCCAACAACAAGTTACCGCCGTCGTATGTTTCCTTATAA

Protein

MGNNTFSDCKVEVLSPIPSAFVQDYNSRDSTGFTIHDILGLHQPFTQPHMPDETQIRYDYQLSNYENVNNIGQNYCSGTEEVSAEGCLTKDDILFNSTSSQINSQVLYDRDYADKELIEYERRGLIADAKDHEKINLQESGFNNQNSSWTNHTSLSTPIVRASTSISGTGMSSTSPPFQKGFTKRARTAYTSSQLVELENEFHQNRYLCRPRRIELANYLQLSERQIKIWFQNRRMKYKKDNKHNKPSSSVDDSSPSSSKELSPSQDHKLSHVRSCGGHDRHRRLLSDSHASHHKIYTSANDNITRPPDYSAMNSMKSTIKGQQGTIELPSYTPNLSYSSYYAAGTSGAAYSPLSEVYRYTNDDSLPSNSTLPPLTSDSYVPNGINLKLNEDMTRFTSNTSYYSSLSNSIVMHHPPTDSYGFNAITSVPTPTYDEGSFTTRTSTLPLSQDSYFSYLTSAENANQLASASNNKLPPSYVSL

Uniprot

D3KYT2 H9JA50 A0A2A4IXF5 A0A060DBT1 A0A194R9J7 A0A212F1M1 + More
A0A2H1V1F5 A0A0L7LK52 A0A194Q328 A0A060DCN6 A0A060D2W5 A0A0I9QQ05 A0A060DBT5

Pubmed

19121390 25340822 26354079 22118469 26227816

EMBL

AB546968 BAI77431.1 BABH01009134 NWSH01005891 PCG63872.1 KJ739619 + More
AIB07875.1 KQ460473 KPJ14508.1 AGBW02010865 OWR47614.1 ODYU01000233 SOQ34651.1 JTDY01000835 KOB75729.1 KQ459551 KPI99962.1 KJ739644 AIB07906.1 KJ739641 AIB07903.1 BK008852 DAA64846.1 KJ739623 AIB07880.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000007151 UP000037510 UP000053268 + More

PRIDE

D3KYT2 H9JA50

Pfam

PF00046 Homeodomain

Interpro

IPR020479   Homeobox_metazoa        + More
IPR009057   Homeobox-like_sf
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

D3KYT2 H9JA50 A0A2A4IXF5 A0A060DBT1 A0A194R9J7 A0A212F1M1 + More
A0A2H1V1F5 A0A0L7LK52 A0A194Q328 A0A060DCN6 A0A060D2W5 A0A0I9QQ05 A0A060DBT5

PDB

2R5Z E-value=1.92585e-17, Score=219

KEGG

100379150 K09303 homeobox protein HoxA/B/D3 | (RefSeq) zen, Bmzen; zerknullt

GO

GO:0006355 GO:0043565 GO:0005634 GO:0003677 GO:0008270 GO:0033177 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

480

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00186

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00595

outside

1 - 480

Pi

7.861358

Theta

17.470348

Tajima's D

-0.301244

CLR

2.236759

CSRT

0.288435578221089

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics