HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.8	1.4	0.0086	0.52	3	23	209	230
2	17.7	1.4	5.4e-05	0.0032	2	23	236	258
3	16.0	0.8	0.00019	0.011	1	23	265	288
4	12.6	1.0	0.0023	0.14	1	23	298	321
5	16.2	0.8	0.00016	0.0097	2	23	328	349
6	21.1	0.6	4.6e-06	0.00027	1	23	355	377

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0086
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ Cg+++k+ + L +H +  H
  KWMTBOMO11050 209 CDLCGEVCKNTDKLATHKKLkH 230
                    9*****************9988 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.4e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp+C+k  ++ + L+rHi++ H
  KWMTBOMO11050 236 QCPKCSKILSSEYYLNRHIKRrH 258
                    7********************99 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC++C+ sF  k +L +Hi+  H
  KWMTBOMO11050 265 FKCTICSLSFAFKGELGSHIKHvH 288
                    8*******************9988 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.0023
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++Cgk++k + +  +H r+ H
  KWMTBOMO11050 298 FSCKICGKVYKCPKSVIVHERSiH 321
                    89******************9989 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 0.00016
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cg +F + + Lk H+r H
  KWMTBOMO11050 328 ECSICGARFYHDDYLKEHMRLH 349
                    5********************9 PP

  == domain 6  score: 21.1 bits;  conditional E-value: 4.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykCp+C++ + ++ n+k+H+r H
  KWMTBOMO11050 355 YKCPICSRGYAQRGNMKSHLRNH 377
                    9********************99 PP