Silkworm Genome Informatics Database

Gene

KWMTBOMO11050

Annotation

PREDICTED:_zinc_finger_protein_808-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr18(-):10962516-10964733 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.099

CDS

ATGGATACCTTATTGTGTAGAATCTGCTTGGAACCAGGGGCCAGTCTGTTCATTTTTGAAAGTTGCACTGAAAATATAAATTCCAAAATTTTCGTTTGCCTAAATGAGAAGATTAAAGATATAGCTGGTTACCCTCGTAACATTTGTGCCAAATGCAACAATATTCTGGATACATTCATTAGTTTCATTGATAAATATAGAAAATCCAATCAGTTTCTATCGAAACAGTTTGCTGACGTTAAGGTAGAAAATACTAGTGAATATGACGAACCCGTGGAATCTGACACAGATATTGTAATAAAGGAGGAAATAGTAAATGGAAAGGAAGGAAAGGAAGACAATGCTCAAAGTTTAACAGAATTAATTAAACCTTTACAATTGGATATAGAAAAGGTTAAAGTGGAACCTTTGAAAAAAAGATTGCCAAGTAATTCTAAGTCTAGAAATAGAACACAAACAAATAAAATAGCATCATCAATTTTAGAGGGCAATTTTATATGGGCAGATAATAAATGGTGTGTAACAGTGGGTGAAACTATAATTAGGAAAACCAAAAAAGTAGTTAAACAGGCAAAAATCAAACCTATAGTTAAAGTTAAAAAGAATTTAGATCCTGCAAAACTATGTGACCTTTGTGGTGAAGTCTGCAAAAATACAGACAAACTCGCAACACACAAGAAACTGAAACATTTTAGTATTCCGAAACAATGCCCAAAATGCTCCAAAATATTATCATCAGAATACTACCTCAACCGTCACATTAAGAGGAGGCATGATGCTGAAAGCAAGAATTTTAAATGTACAATATGCTCTCTCAGTTTTGCATTCAAAGGAGAATTAGGCAGTCATATAAAACACGTTCATAACAAGAAGAACCTACCGAAAAAAGTATTTTCCTGCAAAATATGTGGCAAAGTGTACAAGTGTCCTAAGTCTGTCATAGTACATGAGAGATCCATACATACAGGTCAAAGACCGGCAGAGTGCAGTATATGTGGTGCTCGATTCTATCATGATGATTATTTGAAGGAGCACATGCGATTACATACAGGAGAAACACCATACAAATGCCCTATTTGCAGTCGAGGGTACGCTCAAAGAGGTAACATGAAGAGTCATCTACGCAATCATAGGAGATACATGTCCTTATATCATTAG

Protein

MDTLLCRICLEPGASLFIFESCTENINSKIFVCLNEKIKDIAGYPRNICAKCNNILDTFISFIDKYRKSNQFLSKQFADVKVENTSEYDEPVESDTDIVIKEEIVNGKEGKEDNAQSLTELIKPLQLDIEKVKVEPLKKRLPSNSKSRNRTQTNKIASSILEGNFIWADNKWCVTVGETIIRKTKKVVKQAKIKPIVKVKKNLDPAKLCDLCGEVCKNTDKLATHKKLKHFSIPKQCPKCSKILSSEYYLNRHIKRRHDAESKNFKCTICSLSFAFKGELGSHIKHVHNKKNLPKKVFSCKICGKVYKCPKSVIVHERSIHTGQRPAECSICGARFYHDDYLKEHMRLHTGETPYKCPICSRGYAQRGNMKSHLRNHRRYMSLYH

Uniprot

A0A2A4JFG2 A0A3S2M4P6 A0A2H1W3Q0 A0A2A4JEB8 A0A0N1I8B1 A0A212EXI6 + More
A0A194PHD5 A0A1E1WG77 A0A0L7KQ83

Pubmed

26354079 22118469 26227816

EMBL

NWSH01001778 PCG70170.1 RSAL01000035 RVE51330.1 ODYU01006106 SOQ47657.1 + More
PCG70169.1 KQ460813 KPJ12144.1 AGBW02011741 OWR46203.1 KQ459604 KPI92463.1 GDQN01005183 JAT85871.1 JTDY01007380 KOB65255.1

Proteomes

UP000218220 UP000283053 UP000053240 UP000007151 UP000053268 UP000037510 + More

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4JFG2 A0A3S2M4P6 A0A2H1W3Q0 A0A2A4JEB8 A0A0N1I8B1 A0A212EXI6 + More
A0A194PHD5 A0A1E1WG77 A0A0L7KQ83

PDB

2I13 E-value=2.36508e-22, Score=261

KEGG

101744705 no KO assigned | (RefSeq) uncharacterized LOC101744705

GO

GO:0008270 GO:0003676 GO:0005634 GO:0016021 GO:0046872 GO:0005543 GO:0042626 GO:0016887 GO:0005622 GO:0006810 GO:0003824

Length:

385

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00109

Exp number, first 60 AAs:

0.000880000000000001

Total prob of N-in:

0.01035

outside

1 - 385

Pi

259.816472

Theta

222.28597

Tajima's D

0.517484

CLR

0.225216

CSRT

0.52172391380431

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics