HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	17.3	2.7	7.5e-05	0.0045	1	23	83	105
2	18.1	3.5	4.1e-05	0.0024	2	23	113	134
3	10.2	2.9	0.013	0.78	1	23	139	161
4	16.0	2.4	0.0002	0.012	1	23	167	189
5	24.9	0.4	2.8e-07	1.7e-05	1	23	195	217
6	25.5	1.0	1.8e-07	1.1e-05	1	23	223	245
7	14.8	1.8	0.00046	0.027	1	23	253	275
8	22.4	2.3	1.8e-06	0.00011	1	23	281	303
9	20.9	0.3	5.5e-06	0.00033	1	23	309	331
10	15.7	2.7	0.00023	0.014	1	23	337	359

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C k Fk+  +L++H ++H
  KWMTBOMO10815  83 YSCEECEKIFKTLNSLCAHKKKH 105
                    89********************9 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 4.1e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C+k+Fk  s+LkrH  +H
  KWMTBOMO10815 113 VCSFCKKVFKKLSHLKRHELSH 134
                    7*****************9998 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+dC+ +F +   +k H + H
  KWMTBOMO10815 139 YKCTDCSHTFADENRFKEHVNFH 161
                    9******************9877 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 0.0002
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  C+ksF++   Lk+H+++H
  KWMTBOMO10815 167 HVCLLCKKSFRNMTGLKSHLKIH 189
                    79*******************99 PP

  == domain 5  score: 24.9 bits;  conditional E-value: 2.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+Cgk+F+++ nL++H ++H
  KWMTBOMO10815 195 YLCPICGKRFSSSGNLNQHVNRH 217
                    66********************9 PP

  == domain 6  score: 25.5 bits;  conditional E-value: 1.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+k+F +ks+Lk+H++tH
  KWMTBOMO10815 223 YLCENCPKKFVSKSDLKVHMKTH 245
                    66********************9 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 0.00046
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C+ +F+++s L++H   H
  KWMTBOMO10815 253 YECRECNAKFTSWSRLRTHKYQH 275
                    99*****************8777 PP

  == domain 8  score: 22.4 bits;  conditional E-value: 1.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C+ksF+++++L+rH  +H
  KWMTBOMO10815 281 YKCNACTKSFPNNYSLVRHHLIH 303
                    9*******************999 PP

  == domain 9  score: 20.9 bits;  conditional E-value: 5.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C + F +k+ L+rH r H
  KWMTBOMO10815 309 YQCDLCERAFAQKEGLNRHKRLH 331
                    9********************99 PP

  == domain 10  score: 15.7 bits;  conditional E-value: 0.00023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+++F+ ks+L++H++ H
  KWMTBOMO10815 337 HKCDQCSQTFRLKSDLQQHLSDH 359
                    79******************988 PP