HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.7	0.7	0.081	4.8	2	20	114	132
2	17.4	2.8	7.1e-05	0.0043	1	23	154	176
3	25.1	3.9	2.6e-07	1.5e-05	1	23	184	206
4	22.2	3.4	2e-06	0.00012	1	23	212	235
5	23.5	0.9	8.2e-07	4.9e-05	1	23	241	263
6	18.2	0.3	4e-05	0.0024	2	23	270	291
7	15.2	6.6	0.00034	0.02	1	23	297	319
8	20.6	0.1	6.5e-06	0.00039	1	23	325	347
9	11.6	5.6	0.0048	0.29	1	23	353	375
10	21.6	1.2	3.3e-06	0.0002	1	23	381	403
11	8.2	0.3	0.058	3.4	1	20	409	428

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.081
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C +C k+F  +  +++Hi
  KWMTBOMO10786 114 TCLHCQKVFFKRKVYEKHI 132
                    7*****************8 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C+ s++   +L  H+++H
  KWMTBOMO10786 154 YQCPNCDVSYSKHRSLAMHMKKH 176
                    9*********************9 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 2.6e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF+ k++L+rH+++H
  KWMTBOMO10786 184 YICNICSKSFTYKHLLRRHMKIH 206
                    89*******************99 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+ksF rk++L++H ++ H
  KWMTBOMO10786 212 YECGECHKSFVRKDHLTTHVMSnH 235
                    99******************9988 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 8.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C k F+++ nLk Hir+H
  KWMTBOMO10786 241 YICPICRKDFPQQCNLKDHIRIH 263
                    89********************9 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 4e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cgk F + snL++H  +H
  KWMTBOMO10786 270 LCSECGKGFANVSNLRQHVFRH 291
                    5******************999 PP

  == domain 7  score: 15.2 bits;  conditional E-value: 0.00034
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+ksF++k +L+ H++tH
  KWMTBOMO10786 297 FTCNSCPKSFCTKGQLQCHMSTH 319
                    89********************9 PP

  == domain 8  score: 20.6 bits;  conditional E-value: 6.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++Cg  F+ + +Lk+H+ +H
  KWMTBOMO10786 325 YKCEECGSAFTKPGSLKKHLIIH 347
                    9*******************999 PP

  == domain 9  score: 11.6 bits;  conditional E-value: 0.0048
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+++F+ k++LkrH r+H
  KWMTBOMO10786 353 YACESCNRRFTCKDHLKRHERIH 375
                    88*******************99 PP

  == domain 10  score: 21.6 bits;  conditional E-value: 3.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C + F+++ +L +H r+H
  KWMTBOMO10786 381 YRCTMCERAFTQSNDLLKHVRSH 403
                    9*********************9 PP

  == domain 11  score: 8.2 bits;  conditional E-value: 0.058
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y+C++Cg +F+   +Lk H+
  KWMTBOMO10786 409 YQCTICGDKFRLARELKLHY 428
                    9****************996 PP