Silkworm Genome Informatics Database

Gene

KWMTBOMO10786

Pre Gene Modal

BGIBMGA008429

Annotation

PREDICTED:_zinc_finger_protein_883-like_[Amyelois_transitella]

Location

Bomo_Chr18(+):2925798-2931924 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.585

CDS

ATGCAGGAAGGAGATGGCCTCCCTCAAAAACTCTGTGACAAATGTGTGATGACCTTAAAAATGATTTACACATTTCAAAAACAAGTAATAAAAGCTGAAGAGGAGTTCAGAAAACTGTTAAGAATTCAGCTCGATGTGAAGCATGAACTGCCCGATGATACTTACAGTTTAAAACTTGAGAATGACCTTGAATGTTATGCTACACAAAATGATTTTGGTTTAAATATATTACCTAAAGATGAAGACGGGGCAGACAATAGTAACTTCAGCTTTTTAGATAGTGAATTTAAGGATGAATTTAAAATACGAAATTCACCACCAAAAAAGAAAAAAAGGCAGACATGTCTGCATTGTCAGAAAGTATTTTTTAAAAGGAAAGTGTATGAAAAACATATTGGAGTATGCATAAAAAAAACATTAGATATAAAGACTGAAAGTCATTCTGAAAATCAAGAAGTATACCAGTGTCCGAACTGTGATGTATCATATTCGAAACACCGATCTCTGGCCATGCATATGAAGAAACATAAAAACTCGAATTTTCAGAGTTACATCTGTAATATTTGTTCTAAAAGTTTTACATACAAACATTTACTACGTAGACACATGAAGATTCATGAACAAAAGAGGCAATATGAATGTGGAGAGTGTCATAAATCATTTGTAAGGAAAGACCATTTGACTACCCATGTAATGAGTAATCATGGTGCTTTAAAACCTTACATCTGTCCAATATGCAGAAAAGATTTCCCTCAGCAGTGCAACTTAAAAGACCATATAAGAATACATACCGGTGAAACCCCATTCTTGTGCTCGGAGTGCGGGAAGGGCTTTGCTAATGTCTCTAATCTACGGCAGCACGTGTTTCGTCACGCCGGAGTCAAACCATTTACCTGCAACTCCTGTCCCAAATCATTCTGTACTAAAGGACAATTGCAGTGTCACATGTCAACCCACACGGGCCTGCGTCCTTACAAATGTGAAGAGTGTGGCTCTGCGTTCACCAAGCCGGGCTCCTTGAAGAAACATTTGATAATACACACTGGTATAAAACCATACGCCTGCGAATCCTGCAACAGAAGGTTCACATGCAAAGACCACCTGAAGCGGCACGAGCGCATCCACACCGGGGAGAAGCCGTACCGCTGCACCATGTGCGAGCGCGCCTTCACGCAGAGCAACGACCTGCTCAAGCACGTGCGCTCACACGTCGGACAGAACATATACCAGTGTACAATTTGCGGGGACAAGTTCAGGTTGGCGAGAGAGCTGAAACTGCACTATCCAGTCCATTTCGGAGGGCATCAGCCCGATGATCATCAGGGAAGCCAATTGTCCGACCCAAAGGCGCAGGCAGCCGGAGATATCAGCGAAGTACCAAAGAACGATGACCCCGCTTACACAATACTGATACACAGTTGCAACCCCGGGGATATTAGCATTAATGTCAACACCGACAAGAATTAA

Protein

MQEGDGLPQKLCDKCVMTLKMIYTFQKQVIKAEEEFRKLLRIQLDVKHELPDDTYSLKLENDLECYATQNDFGLNILPKDEDGADNSNFSFLDSEFKDEFKIRNSPPKKKKRQTCLHCQKVFFKRKVYEKHIGVCIKKTLDIKTESHSENQEVYQCPNCDVSYSKHRSLAMHMKKHKNSNFQSYICNICSKSFTYKHLLRRHMKIHEQKRQYECGECHKSFVRKDHLTTHVMSNHGALKPYICPICRKDFPQQCNLKDHIRIHTGETPFLCSECGKGFANVSNLRQHVFRHAGVKPFTCNSCPKSFCTKGQLQCHMSTHTGLRPYKCEECGSAFTKPGSLKKHLIIHTGIKPYACESCNRRFTCKDHLKRHERIHTGEKPYRCTMCERAFTQSNDLLKHVRSHVGQNIYQCTICGDKFRLARELKLHYPVHFGGHQPDDHQGSQLSDPKAQAAGDISEVPKNDDPAYTILIHSCNPGDISINVNTDKN

Uniprot

A0A2A4J3T8 A0A2H1W420 A0A212FC31 A0A194PIK9 A0A1J1IX89 D6WK50 + More
A0A2A4K9S2 A0A2H1VJ69 A0A0A1XQV0 A0A1Y1N9K8 A0A1J1HLS9 W8BH02 A0A194PUN7 A0A194QZA0 A0A0T6B5C2 A0A1W4XDG1 A0A2H1VGT5 A0A1U8CSD7 A0A1W4WKG9 A0A3B4CKX7

Pubmed

22118469 26354079 18362917 19820115 25830018 28004739 + More
24495485

EMBL

NWSH01003334 PCG66529.1 ODYU01006164 SOQ47777.1 AGBW02009236 OWR51299.1 + More
KQ459606 KPI90925.1 CVRI01000063 CRL04767.1 KQ971343 EFA03090.1 NWSH01000022 PCG80654.1 ODYU01002864 SOQ40873.1 GBXI01000896 JAD13396.1 GEZM01009556 GEZM01009554 JAV94533.1 CVRI01000010 CRK88883.1 GAMC01006005 JAC00551.1 KQ459593 KPI96459.1 KQ460890 KPJ10868.1 LJIG01009819 KRT82317.1 ODYU01002490 SOQ40036.1

Proteomes

UP000218220 UP000007151 UP000053268 UP000183832 UP000007266 UP000053240 + More
UP000192223 UP000189706 UP000261440

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF01352   KRAB

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type
IPR036051   KRAB_dom_sf
IPR001909   KRAB

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

CDD

cd07765 KRAB_A-box

ProteinModelPortal

A0A2A4J3T8 A0A2H1W420 A0A212FC31 A0A194PIK9 A0A1J1IX89 D6WK50 + More
A0A2A4K9S2 A0A2H1VJ69 A0A0A1XQV0 A0A1Y1N9K8 A0A1J1HLS9 W8BH02 A0A194PUN7 A0A194QZA0 A0A0T6B5C2 A0A1W4XDG1 A0A2H1VGT5 A0A1U8CSD7 A0A1W4WKG9 A0A3B4CKX7

PDB

5V3M E-value=8.12983e-45, Score=455

KEGG

101735331 no KO assigned | (RefSeq) zinc finger protein OZF-like

GO

GO:0003676 GO:0008270 GO:0005634 GO:0008168 GO:0006355 GO:0046872 GO:0005785 GO:0006886 GO:0006810 GO:0016614 GO:0005506 GO:0003824

Length:

488

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000940000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00150

outside

1 - 488

Pi

332.165027

Theta

230.509841

Tajima's D

1.897353

CLR

0.350868

CSRT

0.867306634668267

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics