HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	23.5	1.9	8.1e-07	4.8e-05	2	23	118	139
2	20.0	1.5	1e-05	0.00063	1	23	145	168
3	23.7	0.4	7e-07	4.2e-05	1	23	176	198
4	23.2	1.5	1e-06	6.1e-05	1	23	204	226
5	19.1	0.5	2.1e-05	0.0012	1	23	232	254
6	19.6	3.4	1.4e-05	0.00083	1	23	260	282
7	24.7	0.5	3.4e-07	2e-05	1	23	288	311
8	2.0	0.2	5.4	3.2e+02	5	19	317	331
9	10.7	2.1	0.0095	0.57	2	23	342	364
10	8.3	0.2	0.052	3.1	1	23	370	395
11	17.9	0.9	4.9e-05	0.0029	1	23	401	424

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.1e-07
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kCp+Cg+++ ++s L+ H+r+H
  KWMTBOMO10682 118 KCPVCGRVCINPSTLTIHMRVH 139
                    8********************9 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+ ++k+  nLkrH+++ H
  KWMTBOMO10682 145 FSCTVCNSKYKDAGNLKRHMNRkH 168
                    89********************99 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 7e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F +k + + H+rtH
  KWMTBOMO10682 176 FVCENCGKAFYSKRDVEIHMRTH 198
                    89********************9 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ CgksF++  +L rH+ +H
  KWMTBOMO10682 204 YTCNACGKSFTQATSLFRHRLRH 226
                    9********************99 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 2.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k F++k+ L++H  +H
  KWMTBOMO10682 232 YSCTICNKLFRTKDGLRNHALVH 254
                    89*****************9998 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 1.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+C++sFk k n  +Hi+ H
  KWMTBOMO10682 260 FSCPICNMSFKYKNNVHKHIKNH 282
                    89*******************99 PP

  == domain 7  score: 24.7 bits;  conditional E-value: 3.4e-07
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg+sF+ k  Lk+Hi + H
  KWMTBOMO10682 288 FVCNYCGRSFSMKGGLKSHIDRqH 311
                    89******************9988 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 5.4
                    TTTEEESSHHHHHHH CS
        zf-C2H2   5 dCgksFkrksnLkrH 19 
                    +C+ + k+  nL++H
  KWMTBOMO10682 317 YCNVCSKHVPNLEVH 331
                    455555555555555 PP

  == domain 9  score: 10.7 bits;  conditional E-value: 0.0095
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+ sF++   L++H +  H
  KWMTBOMO10682 342 KCELCSSSFSQLKALTHHVNFkH 364
                    8*****************98766 PP

  == domain 10  score: 8.3 bits;  conditional E-value: 0.052
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    +kC   +C + F++k +L  H  + H
  KWMTBOMO10682 370 HKCLvaGCEMAFPSKPMLDYHTAKvH 395
                    689999***************99988 PP

  == domain 11  score: 17.9 bits;  conditional E-value: 4.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C++ F rk +L rH+   H
  KWMTBOMO10682 401 FPCDRCSRGFYRKNDLSRHMIGtH 424
                    89******************8777 PP