HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.1	0.5	0.13	7.6	3	23	137	157
2	10.4	4.5	0.011	0.68	1	23	163	186
3	9.2	0.0	0.029	1.7	2	23	208	229
4	19.8	2.5	1.2e-05	0.00071	1	23	235	258
5	16.8	0.1	0.00011	0.0067	1	23	265	287
6	16.6	4.3	0.00012	0.0074	1	23	293	315
7	15.7	4.0	0.00023	0.014	1	23	321	343
8	12.2	5.0	0.0031	0.18	1	23	349	371
9	18.8	1.0	2.4e-05	0.0015	1	23	377	400
10	2.5	0.5	3.6	2.2e+02	3	23	407	424
11	9.4	1.6	0.023	1.4	1	23	430	453
12	13.6	0.5	0.0011	0.065	1	23	459	484
13	19.7	4.3	1.3e-05	0.00077	1	23	490	513

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.13
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cg++   +s +k H+r+H
  KWMTBOMO10681 137 CAICGYRAACQSAYKDHMRSH 157
                    999**99999**********9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C+k  + k+ L++H  + H
  KWMTBOMO10681 163 FECEICHKHLSGKYTLRKHKESrH 186
                    89*****************98877 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.029
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +Cg+  +++s L+ H  +H
  KWMTBOMO10681 208 QCVVCGQILPSSSALEIHNTIH 229
                    7*****************7776 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 1.2e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C++sF+ k  LkrHi t H
  KWMTBOMO10681 235 YQCDVCNRSFRLKGCLKRHIETnH 258
                    9********************999 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ Cg sF rk +   Hir+H
  KWMTBOMO10681 265 FICETCGNSFYRKADIIIHIRSH 287
                    78********************9 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 0.00012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C+ +F++ s+L rH rtH
  KWMTBOMO10681 293 YECKLCHSKFSQLSSLIRHKRTH 315
                    99********************9 PP

  == domain 7  score: 15.7 bits;  conditional E-value: 0.00023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+k F +k+  +rH+ +H
  KWMTBOMO10681 321 HSCSTCNKQFYDKYAVRRHMLSH 343
                    68*******************99 PP

  == domain 8  score: 12.2 bits;  conditional E-value: 0.0031
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+k Fk+ks  + H++ H
  KWMTBOMO10681 349 HKCHLCDKLFKTKSARNLHLSLH 371
                    79******************999 PP

  == domain 9  score: 18.8 bits;  conditional E-value: 2.4e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ Cg++F+ k nLk+H+ + H
  KWMTBOMO10681 377 FICSFCGMMFSLKGNLKTHMIRkH 400
                    78*******************999 PP

  == domain 10  score: 2.5 bits;  conditional E-value: 3.6
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C k F    nL  H+r+H
  KWMTBOMO10681 407 CKVCMKEF---PNLAEHLRKH 424
                    66666666...6888888888 PP

  == domain 11  score: 9.4 bits;  conditional E-value: 0.023
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  C++ F ++ +L  H +  H
  KWMTBOMO10681 430 YVCRTCNQAFATQRSLSFHTMYkH 453
                    99*************987776655 PP

  == domain 12  score: 13.6 bits;  conditional E-value: 0.0011
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    y+C+  +C+k F+   +L++H+ + H
  KWMTBOMO10681 459 YRCTvgECNKAFPMMKLLETHLYKyH 484
                    99********************9988 PP

  == domain 13  score: 19.7 bits;  conditional E-value: 1.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+++F r+s+L+rH++  H
  KWMTBOMO10681 490 FMCSHCPRRFYRRSDLTRHLKGsH 513
                    78******************9888 PP