Gene

KWMTBOMO10472

Pre Gene Modal

BGIBMGA006998

Annotation

PREDICTED:_non-histone_protein_10_[Papilio_polytes]

Location

Bomo_Chr17(-):11993089-11994196      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 4.052

CDS

ATGACAGTACAACAGCTCAACTCAAATAATTCTGACGACTCAGATGATATGGTTAGTTTACCGCCCGAAGAAGAAATTTATAGACGAAAATATCAACTGTTATTGGAACGATGTGAAGTCTTGCAACAGGATAACGAAAGAATCATAAACAGGATACACGAAGTGAAAAAAGTGACTAAAAGGTACCGTAAAGATATTAAGTTAGTGATTGAAAGGTTGGACAGACATGGCGATCCTTTTAGGAGCGCTGTATTGGAAATGGATACGAAATCTGAGACTGTCCAGAGACCTGCTCGTCCTGTAGCGAAAGTACAACCAGTCGCCAAACAAACCGACAAACAAAACGGAGGGAAAAAAACAGGAGCCAAACGAAAAACAAAGGCAGAGAAGCCTGAAAAAGATCCTAATGCTCCAAAGAAACCTTGTAATGCATTTTTCCAATTTTGTCAAGAACAGAGGCCTTTGGTAGTTGCTGAAGCTAATTCAGAAGTAGGTGCAGAACCATCCAAACAAGAAGTTACTAGACAATTGGCATCAAGATGGAGAGCTTTGACGAATGATGAAAAAAGGGTATATGTGGCAATGTTTGAGAGGTCAAAAGAGAAATATGCAGAAGAAATGACAGCATATAATATCAAAAAGGAACAATGA

Protein

MTVQQLNSNNSDDSDDMVSLPPEEEIYRRKYQLLLERCEVLQQDNERIINRIHEVKKVTKRYRKDIKLVIERLDRHGDPFRSAVLEMDTKSETVQRPARPVAKVQPVAKQTDKQNGGKKTGAKRKTKAEKPEKDPNAPKKPCNAFFQFCQEQRPLVVAEANSEVGAEPSKQEVTRQLASRWRALTNDEKRVYVAMFERSKEKYAEEMTAYNIKKEQ

Uniprot

H9JBV3   A0A2H1VIS9   A0A3S2P3R6   S4PFU7   A0A2A4IU83   A0A212ETX9   + More
A0A194PJ67   A0A194QV30   A0A0L7K551   A0A1B6CCF6   A0A154PJW9   E9JCN2   A0A151K107   A0A151JP39   F4X1R2   A0A026WN12   A0A151X9T2   A0A195B576   A0A158NV75   A0A0J7NT70   A0A195CUM7   A0A2A3ENH5   A0A087ZZI6   E2AFR0   A0A0L7QND5   A0A067QJQ9   A0A232EZR0   A0A1B6KVW4   A0A1B6J6F2   A0A1W4W493   J9KAZ0   E2BF52   C4WW64   A0A3Q0IYF5   T1IES5   A0A0T6B501   A0A2R7X7J7   A0A1L8DWF4   A0A1L8DWD2   A0A1Y1KID1   D6WVJ6   A0A1B0GLZ0   A0A0M9A7B3   A0A023F165   A0A0N7ZA69   A0A2J7QWQ2   A0A2P8XH09   N6U5T0   A0A0B6ZNB2   A0A3S1HKJ3   A7S799   A0A310S4D2   A0A2T7P9B6   K1RBB5   R7VGT2   A0A0B6ZPQ2   A0A3M6TJE0   A0A1S3HRP1   A0A210PHC2   V4AMX9   A0A369RTD4   C3Y9J6   A0A2G8LJP4   A0A163M2R0   A0A1Y1VF09   A0A1Y1WV80   A0A1Y1Z550   A0A163JG73   A0A0L8GHB3   A0A077X0W7   A0A0B7N8W7   A0A1Y1WMB0   A0A168KBZ9   A0A168LBQ6   A0A2G4SU54   A0A1X0RDD0   A0A0C7CJL7   A0A0C7B4N7   A0A367K5X5   A0A068SFV7   A0A1C7MUK1  

Pubmed

19121390    23622113    22118469    26354079    26227816    21282665    + More
21719571    24508170    30249741    21347285    20798317    24845553    28648823    28004739    18362917    19820115    25474469    29403074    23537049    17615350    22992520    23254933    30382153    28812685    30042472    18563158    29023486    27956601    29674435   

EMBL

BABH01014932    ODYU01002794    SOQ40733.1    RSAL01000031    RVE51618.1    GAIX01003877    + More
JAA88683.1    NWSH01006781    PCG63239.1    AGBW02012517    OWR44950.1    KQ459603    KPI93083.1    KQ461137    KPJ08835.1    JTDY01010417    KOB58215.1    GEDC01026161    JAS11137.1    KQ434924    KZC11588.1    GL771849    EFZ09436.1    KQ981189    KYN45240.1    KQ978820    KYN28148.1    GL888549    EGI59608.1    KK107167    QOIP01000010    EZA56494.1    RLU17788.1    KQ982365    KYQ57145.1    KQ976595    KYM79641.1    ADTU01026937    LBMM01001888    KMQ95600.1    KQ977279    KYN04388.1    KZ288212    PBC32802.1    GL439124    EFN67739.1    KQ414855    KOC60128.1    KK853278    KDR09064.1    NNAY01001464    OXU23882.1    GEBQ01024381    JAT15596.1    GECU01012960    JAS94746.1    ABLF02028301    GL447936    EFN85678.1    AK341878    BAH72134.1    ACPB03015821    LJIG01009769    KRT82418.1    KK858512    PTY27774.1    GFDF01003322    JAV10762.1    GFDF01003323    JAV10761.1    GEZM01085157    JAV60171.1    KQ971357    EFA08580.1    AJVK01009183    KQ435732    KOX77339.1    GBBI01003978    JAC14734.1    GDRN01103797    GDRN01103796    JAI58016.1    NEVH01009422    PNF33017.1    PYGN01002160    PSN31290.1    APGK01047774    KB741089    KB632382    ENN73937.1    ERL94168.1    HACG01023148    CEK70013.1    RQTK01000339    RUS81396.1    DS469591    EDO40495.1    KQ779356    OAD51995.1    PZQS01000005    PVD30008.1    JH818012    EKC38520.1    AMQN01003942    KB292298    ELU17814.1    HACG01023754    CEK70619.1    RCHS01003480    RMX41542.1    NEDP02076700    OWF35880.1    KB201248    ESO98507.1    NOWV01000238    RDD37502.1    GG666492    EEN63252.1    MRZV01000055    PIK60474.1    LT553414    SAM00728.1    MCFH01000012    ORX53782.1    MCFG01000249    ORX77413.1    MCFE01000026    ORY05336.1    LT552482    SAL99132.1    KQ421836    KOF76249.1    LK023368    CDS13129.1    LN731777    CEP14915.1    MCFD01000001    ORX74701.1    AMYB01000005    OAD02229.1    AMYB01000004    OAD03337.1    KZ303851    PHZ11926.1    KV921869    ORE10063.1    CCYT01000555    CEG83709.1    CCYT01000004    CEG65942.1    PJQL01000266    RCH97565.1    CBTN010000083    CDH60131.1    LUGH01002060    OBZ80490.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    + More
UP000037510    UP000076502    UP000078541    UP000078492    UP000007755    UP000053097    UP000279307    UP000075809    UP000078540    UP000005205    UP000036403    UP000078542    UP000242457    UP000005203    UP000000311    UP000053825    UP000027135    UP000215335    UP000192223    UP000007819    UP000008237    UP000079169    UP000015103    UP000007266    UP000092462    UP000053105    UP000235965    UP000245037    UP000019118    UP000030742    UP000271974    UP000001593    UP000245119    UP000005408    UP000014760    UP000275408    UP000085678    UP000242188    UP000030746    UP000253843    UP000001554    UP000230750    UP000078561    UP000193719    UP000193944    UP000193498    UP000053454    UP000054107    UP000193922    UP000077051    UP000242254    UP000242414    UP000054919    UP000252139    UP000027586    UP000093000   

PRIDE

H9JBV3   

Pfam

PF00505   HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR033555   TFPT       
IPR030483   Nhp10       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9JBV3   A0A2H1VIS9   A0A3S2P3R6   S4PFU7   A0A2A4IU83   A0A212ETX9   + More
A0A194PJ67   A0A194QV30   A0A0L7K551   A0A1B6CCF6   A0A154PJW9   E9JCN2   A0A151K107   A0A151JP39   F4X1R2   A0A026WN12   A0A151X9T2   A0A195B576   A0A158NV75   A0A0J7NT70   A0A195CUM7   A0A2A3ENH5   A0A087ZZI6   E2AFR0   A0A0L7QND5   A0A067QJQ9   A0A232EZR0   A0A1B6KVW4   A0A1B6J6F2   A0A1W4W493   J9KAZ0   E2BF52   C4WW64   A0A3Q0IYF5   T1IES5   A0A0T6B501   A0A2R7X7J7   A0A1L8DWF4   A0A1L8DWD2   A0A1Y1KID1   D6WVJ6   A0A1B0GLZ0   A0A0M9A7B3   A0A023F165   A0A0N7ZA69   A0A2J7QWQ2   A0A2P8XH09   N6U5T0   A0A0B6ZNB2   A0A3S1HKJ3   A7S799   A0A310S4D2   A0A2T7P9B6   K1RBB5   R7VGT2   A0A0B6ZPQ2   A0A3M6TJE0   A0A1S3HRP1   A0A210PHC2   V4AMX9   A0A369RTD4   C3Y9J6   A0A2G8LJP4   A0A163M2R0   A0A1Y1VF09   A0A1Y1WV80   A0A1Y1Z550   A0A163JG73   A0A0L8GHB3   A0A077X0W7   A0A0B7N8W7   A0A1Y1WMB0   A0A168KBZ9   A0A168LBQ6   A0A2G4SU54   A0A1X0RDD0   A0A0C7CJL7   A0A0C7B4N7   A0A367K5X5   A0A068SFV7   A0A1C7MUK1  

PDB

1HMF     E-value=8.05573e-06,     Score=115

KEGG

101735765    no KO assigned | (RefSeq) HMG1/2-like protein

GO

GO:0003677   GO:0005634   GO:0006338   GO:0008301   GO:0006357   GO:0008134   GO:0000790  

PANTHER

PTHR35084   PTHR13711:SF309  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.22267

outside

1  -  216

 

 

Pi

47.881286

Theta

47.791782

Tajima's D

0.005822

CLR

0.629867

CSRT

0.369881505924704

Interpretation

Uncertain