Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO10172	zf-C2H2	8e-17	9.9e-05	4	+ View
HMM length of domain: 23 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 15.8 0.6 0.00022 0.013 1 23 440 462 2 15.5 0.2 0.00028 0.017 1 23 468 490 3 19.3 1.0 1.7e-05 0.001 1 23 496 518 4 22.5 2.1 1.7e-06 9.9e-05 3 23 526 546 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 0.00022 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y Cp+C + ++ k++L++H+++H KWMTBOMO10172 440 YCCPECQMAYREKDELEQHLSVH 462 89*****************99 PP == domain 2 score: 15.5 bits; conditional E-value: 0.00028 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 + C++Cg krk++L+rH H KWMTBOMO10172 468 FICGICGAGLKRKEHLERHKLGH 490 78*************9877 PP == domain 3 score: 19.3 bits; conditional E-value: 1.7e-05 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C+k Fkr+++L+ H H KWMTBOMO10172 496 YVCSVCTKGFKRREHLNLHAVLH 518 9**************8777 PP == domain 4 score: 22.5 bits; conditional E-value: 1.7e-06 ETTTTEEESSHHHHHHHHHCC CS zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C++Cgk F rk++L++H r+H KWMTBOMO10172 526 CGECGKGFYRKDHLRKHTRSH 546 ******************9 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO10172

zf-C2H2

8e-17

9.9e-05

+ View

						  HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.8	0.6	0.00022	0.013	1	23	440	462
2	15.5	0.2	0.00028	0.017	1	23	468	490
3	19.3	1.0	1.7e-05	0.001	1	23	496	518
4	22.5	2.1	1.7e-06	9.9e-05	3	23	526	546

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 0.00022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C + ++ k++L++H+++H
  KWMTBOMO10172 440 YCCPECQMAYREKDELEQHLSVH 462
                    89*******************99 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 0.00028
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg   krk++L+rH   H
  KWMTBOMO10172 468 FICGICGAGLKRKEHLERHKLGH 490
                    78*****************9877 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k Fkr+++L+ H   H
  KWMTBOMO10172 496 YVCSVCTKGFKRREHLNLHAVLH 518
                    9******************8777 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 1.7e-06
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk F rk++L++H r+H
  KWMTBOMO10172 526 CGECGKGFYRKDHLRKHTRSH 546
                    ********************9 PP