Silkworm Genome Informatics Database

Gene

KWMTBOMO10172

Pre Gene Modal

BGIBMGA005626

Annotation

PREDICTED:_transcriptional_regulator_CRZ2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr17(-):3502760-3522673 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.745

CDS

ATGACTTTTGGCAAGGATTACGCCTTAAATTTTATGACCTGCCTTAACAATAATGGCCAATATTTATTTCAGACGATGACAGAAAATAGGAAAAGATCTCGGGAAGATGACACGTGCGAGTTTATGCCGCTATCAAAACGAATTAATAATTTGCACATCAACAACGGTCTTGTCAACACAAGTGCATCTCAATCACGAGATTCTAGTCAAGTAAATAGTATTATAATTGACAATGGCATATCATCGCCTAAAAGTAAACAATCCAGTGACGAAGATAGCGAGATGAATTTCGCTACGTTTGCTGCGGGAGGTGCGCATTTCGTGACCACTGGAGGGCAGCTACCGGTTACGAAAATTCAACAGAATGTGTCGAACAATGGAAACTCTTTATCACAGATGGTAGGTATGGTGGGGGGTGTCACTATGGGCGAGGGTGGCATGCAGTATGTCCGGTCGCTGGACGGCGGCACCAGTTTGCAGCCCACTCCTCAACTCATCTCCGTGCCTATAGCGTTGCCCGGAGTCAAACCTGGTGATCCGCAACCAACGGTGCAAATACAGGTGCTCAATCCGAATCTACTACAAACTCAGCAACAACCGAAATATCATATGCAAATACCCATACAGGGATTACAGAATGGTGCTGTTTTGACCTTGGCGTATTCACCGGAAACTAACGACGCTGGCACCTTACAGCTAGTCGGACAGAATTCATTAGGAGAAGGGCTCCAAGTATTAACCGCTCTCTCACCAGATCTGCAAGTTATACAGCCTTCACAAACTCGAACACATGACAGTGAACATAACCAGCCTACTATGCATCAGGTATTCATAACACCGAACCAACAGATTATTATAAATGGTCCGGATAAAGCTTTGAACAACAACACAGACAACAATAATCCGAACATCACTAATATTACCATCAAAGAGGAATGTGAAGAAAACATTGATGATGAAAGTTCACAAGGGACTGAGACAAGTGACAGTATGTCATATCCATCGAACCCCAGTGATGAGGCGCTGCTAATAAAGTACCTCAACCAATTTCCGCAGGAAAAACAATCATTGCCTGCTTCTCTACAACAGTTCTTAAGGCTGAAACATACTGAGGCAAAAAAGCAGATGATCGAAGTTGAAGTTCCACCAGAGCACGACAAAACAGTCGAGGCCGTCGCTGAAGCCATTCTCAGTGAAGACGGCACTTTAAGAATAAAAAGCAAGAAAAGAAAGAAATACAAAAAGAAGCCAAGTAAACCGGCCCGACCGAAGCCAGGGCAGGTTGTCATAGCGACTGCCGCCGATGGAACACCCATATATTGCTGTCCAGAATGTCAGATGGCATACCGAGAAAAGGATGAACTGGAACAACACCTTAGTGTTCACAAGATCGAGAGGAGATTTATATGTGGAATCTGTGGTGCTGGCTTGAAACGCAAAGAGCATCTAGAGAGACACAAGCTAGGACACAACCCGGAGCGGCCCTACGTGTGCTCCGTCTGCACCAAGGGCTTCAAGCGACGGGAACATCTCAACCTCCACGCCGTGCTGCACTCCGGGGTCAAGACTGAGATATGCGGAGAATGCGGGAAAGGCTTCTACCGTAAGGATCACCTCCGCAAGCACACACGGTCGCACGAGAGTAAGCGAGCTCGCGAGCAAGCGGACGCGGCCACTGCTGAGAAGCCACAACCTGCCAACAACAATACTTCTAGTATACCCGAGATCACCATTCATATTCCAACGAGTTCAAGCATGCAAGTGCCCATCGAGATAAACATCCCCCAGCACCTCGTGACGTCACTGGCGTCAGCGCAGCAGCAGCAGCAGCAGCAACAAGCACACGAAACACTGGACGCCCTATTGGCCCAACACACCTGA

Protein

MTFGKDYALNFMTCLNNNGQYLFQTMTENRKRSREDDTCEFMPLSKRINNLHINNGLVNTSASQSRDSSQVNSIIIDNGISSPKSKQSSDEDSEMNFATFAAGGAHFVTTGGQLPVTKIQQNVSNNGNSLSQMVGMVGGVTMGEGGMQYVRSLDGGTSLQPTPQLISVPIALPGVKPGDPQPTVQIQVLNPNLLQTQQQPKYHMQIPIQGLQNGAVLTLAYSPETNDAGTLQLVGQNSLGEGLQVLTALSPDLQVIQPSQTRTHDSEHNQPTMHQVFITPNQQIIINGPDKALNNNTDNNNPNITNITIKEECEENIDDESSQGTETSDSMSYPSNPSDEALLIKYLNQFPQEKQSLPASLQQFLRLKHTEAKKQMIEVEVPPEHDKTVEAVAEAILSEDGTLRIKSKKRKKYKKKPSKPARPKPGQVVIATAADGTPIYCCPECQMAYREKDELEQHLSVHKIERRFICGICGAGLKRKEHLERHKLGHNPERPYVCSVCTKGFKRREHLNLHAVLHSGVKTEICGECGKGFYRKDHLRKHTRSHESKRAREQADAATAEKPQPANNNTSSIPEITIHIPTSSSMQVPIEINIPQHLVTSLASAQQQQQQQQAHETLDALLAQHT

Uniprot

A0A2A4JSF0 A0A212EPH2 A0A194QB48 A0A1W4W4I1 A0A1W4WG04 A0A139WD49 + More
D2A549 A0A1Y1MA85 A0A2S2R597

Pubmed

22118469 26354079 18362917 19820115 28004739

EMBL

NWSH01000703 PCG74696.1 AGBW02013457 OWR43392.1 KQ459232 KPJ02654.1 + More
KQ971361 KYB25870.1 EFA05314.2 GEZM01037821 JAV81908.1 GGMS01015329 MBY84532.1

Proteomes

UP000218220 UP000007151 UP000053268 UP000192223 UP000007266

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4JSF0 A0A212EPH2 A0A194QB48 A0A1W4W4I1 A0A1W4WG04 A0A139WD49 + More
D2A549 A0A1Y1MA85 A0A2S2R597

PDB

5EI9 E-value=5.87661e-21, Score=251

KEGG

101741897 no KO assigned | (RefSeq) zinc finger protein 311

GO

GO:0003676 GO:0046872 GO:0009116 GO:0003824 GO:0008152 GO:0004588 GO:0006221 GO:0006402

Length:

626

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06931

Exp number, first 60 AAs:

0.04725

Total prob of N-in:

0.00403

outside

1 - 626

Pi

266.817558

Theta

162.198827

Tajima's D

2.663421

CLR

0.541029

CSRT

0.95955202239888

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree