HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.6	0.6	0.0023	0.14	1	23	345	367
2	17.1	1.3	8.6e-05	0.0052	1	23	373	395
3	15.3	1.1	0.00032	0.019	1	23	401	423
4	21.8	5.0	2.8e-06	0.00017	1	23	429	451

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C++ ++ + +L++H+  H
  KWMTBOMO10171 345 YCCPECHMAYPERGLLEQHLVGH 367
                    89*****************9766 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 8.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+   krk++L+rH ++H
  KWMTBOMO10171 373 FICDICNAALKRKDHLTRHKQSH 395
                    78******************999 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 0.00032
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k Fkrk++L+ H  +H
  KWMTBOMO10171 401 HVCSVCLKAFKRKEQLTLHFVIH 423
                    79*****************7766 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 2.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cgk F rk++L++H r+H
  KWMTBOMO10171 429 HICNECGKGFYRKDHLRKHTRSH 451
                    67********************9 PP