Silkworm Genome Informatics Database

Gene

KWMTBOMO10171

Pre Gene Modal

BGIBMGA005627

Annotation

PREDICTED:_zinc_finger_protein_551-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr17(-):3487505-3493753 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.003

CDS

ATGAACTTCGCTCCGTTCACGGGCCACATACCGCCTGCCTCGGCGATCCCAAATATCCACCAGTTCGCTGCAAAGTTCGGATACGAGGGAGGGGCGAGTACATCGGGCGGAGTGCTGCAGGAGACGCGCTTTCAATCTTCGGGCTCTGGAGGTTCAGTGCAATTTGCCGTGGCACCGAACACCAACACCGTAGCAGTGGACGGCGTCAAGTTCCGACAGGCAGAGAGCGTGGTTGTGGTCAGCAATGCCCAGCCAGTCTCTGTCGCTTTAGCGGGAATCGCGCCAATACATACTGTGAACGCCGGTGTCAAATATCAGACAATAACAGCATCGTCGTCTTCCGTAAATCTGGGTAACGTCTCGTATGGAGGCCAAACTAGTTACGTCCAAGCCGAGGTTCAACAGTTGAAGGAACAGCGTCTGGACAAACGCGAATACCGCGAAGAGTTGCATCACGATTTAATGGCCACCATGATGCATCAGCATCAAGGTGAATACTACATAACCCAACCGCTACAGCAAGGAACGCAGCAATTGCTGGTCGTTCTCCACGAGCCCAAAGAAGCTGCGGCTTTGGCGCGCGCTATCAAACAGGAAGGCCGATCAGACCGCAATACGACCGCAGTCCCAGCTGAATATATCAGCATTGGAGACGTAACCGATGCATCAACATGGCAGACCCTCGGCAGCGGCGTCGCGGACTACCTCTCAGCGCTACCGCTGCCCCTGCATCATTTGCTGAAATATTCAACTCCCGTGACAGACAATAAAAGGGATGATCATCCTACTGTCGTCACAGCTGTGAATCCTAGTACACTGAATCCAACGCCTATAACTTGTGTGTCTCCATCCGCCGTGAACAGTGTCGTAGTGCAAACAGCGACCATCGTGAATCAATCCCCTAATATAAACTCTGATATAAGTGTTCCTCTCGGAAGAAGGAAGAAGAAGAAAAAAATACAGAAAGAGAAGAAGCCGCGTCCGAAACCCGGAGAGATAAGACTCACTACCGCTTTAGATGGGAGCACGTTATACTGCTGCCCGGAGTGCCACATGGCGTACCCTGAACGTGGTCTGTTGGAGCAGCATCTAGTGGGACACACTTTAGAGAGGAGGTTTATTTGTGACATTTGTAATGCGGCATTGAAACGGAAAGATCATTTAACGAGACATAAACAATCCCATAACCCGGAGCGACCTCACGTCTGCTCCGTTTGTCTCAAAGCCTTCAAAAGAAAGGAACAGCTCACACTGCACTTTGTTATACATTCCGGAGAAAAGAGACACATCTGTAACGAATGTGGAAAAGGTTTCTACCGGAAGGATCACCTTCGTAAGCACACGCGTTCGCACATAGCGCGGCGCGTCAAGGCGGAGCTTTCCCAACAAACCGCGCCCGCCTCGTCCTGA

Protein

MNFAPFTGHIPPASAIPNIHQFAAKFGYEGGASTSGGVLQETRFQSSGSGGSVQFAVAPNTNTVAVDGVKFRQAESVVVVSNAQPVSVALAGIAPIHTVNAGVKYQTITASSSSVNLGNVSYGGQTSYVQAEVQQLKEQRLDKREYREELHHDLMATMMHQHQGEYYITQPLQQGTQQLLVVLHEPKEAAALARAIKQEGRSDRNTTAVPAEYISIGDVTDASTWQTLGSGVADYLSALPLPLHHLLKYSTPVTDNKRDDHPTVVTAVNPSTLNPTPITCVSPSAVNSVVVQTATIVNQSPNINSDISVPLGRRKKKKKIQKEKKPRPKPGEIRLTTALDGSTLYCCPECHMAYPERGLLEQHLVGHTLERRFICDICNAALKRKDHLTRHKQSHNPERPHVCSVCLKAFKRKEQLTLHFVIHSGEKRHICNECGKGFYRKDHLRKHTRSHIARRVKAELSQQTAPASS

Uniprot

H9J7Y5 A0A2A4JSV2 A0A2H1V5I3 A0A3S2ND82 A0A212EPK8 A0A194QSI5 + More
A0A194QAT9 A0A2A4JRN7

Pubmed

19121390 22118469 26354079

EMBL

BABH01020164 BABH01020165 NWSH01000703 PCG74694.1 ODYU01000778 SOQ36087.1 + More
RSAL01000090 RVE48078.1 AGBW02013457 OWR43391.1 KQ461155 KPJ08279.1 KQ459232 KPJ02653.1 PCG74695.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More

PRIDE

H9J7Y5

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J7Y5 A0A2A4JSV2 A0A2H1V5I3 A0A3S2ND82 A0A212EPK8 A0A194QSI5 + More
A0A194QAT9 A0A2A4JRN7

PDB

5EI9 E-value=1.86721e-19, Score=236

KEGG

101740620 no KO assigned | (RefSeq) zinc finger protein 551-like

GO

GO:0003676 GO:0046872 GO:0009116 GO:0003824 GO:0008152 GO:0004588 GO:0006221 GO:0006402

Length:

469

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0360000000000001

Exp number, first 60 AAs:

0.00092

Total prob of N-in:

0.00244

outside

1 - 469

Pi

309.970636

Theta

136.12454

Tajima's D

4.177653

CLR

0

CSRT

0.999350032498375

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree