HMM length of domain: 19 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.7	12.0	9.4e-07	0.0053	1	19	29	51
2	-1.7	1.0	0.53	3e+03	6	10	81	85
3	3.9	10.1	0.0096	54	1	11	91	101
4	-0.5	1.1	0.23	1.3e+03	3	10	105	112
5	12.1	16.1	2.7e-05	0.15	1	19	112	136
6	-4.2	3.7	3	1.7e+04	14	18	164	169
7	5.2	12.7	0.0037	21	1	18	175	191
8	-0.7	1.1	0.26	1.5e+03	8	13	197	202
9	26.1	12.9	1.1e-09	6e-06	1	18	228	251
10	6.6	7.4	0.0014	7.8	1	13	258	269
11	-3.9	0.8	2.7	1.5e+04	15	19	278	285

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.4e-07
       zf-NF-X1  1 CG....nHtCeklCHeGpCppCk 19
                   CG    +H C+  CHeGpCp+C+
  KWMTBOMO10150 29 CGpagdKHFCKLDCHEGPCPVCP 51
                   899999****************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.53
       zf-NF-X1  6 CeklC 10
                   C+k+C
  KWMTBOMO10150 81 CQKKC 85
                   ***** PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0096
       zf-NF-X1   1 CGnHtCeklCH 11 
                    CG+H+C++ C+
  KWMTBOMO10150  91 CGRHRCRACCC 101
                    **********8 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.23
       zf-NF-X1   3 nHtCeklC 10 
                    +H+C  +C
  KWMTBOMO10150 105 QHRCGLVC 112
                    6***9999 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 2.7e-05
       zf-NF-X1   1 CG......nHtCeklCHeGpCppCk 19 
                    CG       H+C+  CH G C pC+
  KWMTBOMO10150 112 CGrslacqTHRCQDFCHTGHCAPCP 136
                    557777779***************7 PP

  == domain 6  score: -4.2 bits;  conditional E-value: 3
       zf-NF-X1  14 pCp.pC 18 
                    pC  pC
  KWMTBOMO10150 164 PCSaPC 169
                    443344 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.0037
       zf-NF-X1   1 CGnHtCeklCHeGpCppC 18 
                    CG H     CH G+CppC
  KWMTBOMO10150 175 CG-HEPLHSCHTGDCPPC 191
                    55.555567********* PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.26
       zf-NF-X1   8 klCHeG 13 
                    ++CH G
  KWMTBOMO10150 197 RTCHGG 202
                    89**88 PP

  == domain 9  score: 26.1 bits;  conditional E-value: 1.1e-09
       zf-NF-X1   1 CGnHtCeklCHeGpC......ppC 18 
                    CG+HtC+k+CH+GpC      +pC
  KWMTBOMO10150 228 CGKHTCIKVCHKGPCdagkctQPC 251
                    ***************776655566 PP

  == domain 10  score: 6.6 bits;  conditional E-value: 0.0014
       zf-NF-X1   1 CGnHtCeklCHeG 13 
                    CG H C + CH+G
  KWMTBOMO10150 258 CG-HPCGAACHSG 269
                    **.*********9 PP

  == domain 11  score: -3.9 bits;  conditional E-value: 2.7
       zf-NF-X1  15 Cp...pCk 19 
                    Cp   pC+
  KWMTBOMO10150 278 CPsaaPCR 285
                    76556885 PP