HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.9	2.1	0.035	2.1	3	23	74	94
2	8.0	0.5	0.066	3.9	3	23	102	123
3	6.9	0.1	0.15	8.8	2	23	131	153
4	21.8	3.5	2.8e-06	0.00017	1	23	159	181
5	17.2	2.0	8.1e-05	0.0049	1	23	187	209
6	11.0	1.6	0.0076	0.45	1	21	215	235
7	9.3	0.9	0.025	1.5	3	19	256	272
8	22.4	0.7	1.8e-06	0.0001	1	23	582	604
9	19.3	0.7	1.8e-05	0.0011	1	23	611	634
10	9.6	0.2	0.021	1.3	1	12	642	653

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.035
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C++C+++F +   +  H+r+H
  KWMTBOMO09744 74 CEICKRKFDNAKKYYGHLRVH 94
                   99******************9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.066
                    ETTTT.EEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCg.ksFkrksnLkrHirtH 23 
                    C+ C+  +F++k +L+rH  +H
  KWMTBOMO09744 102 CEQCPnAKFTTKQQLMRHSLIH 123
                    999999************8887 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.15
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp C+  F     L++H+   H
  KWMTBOMO09744 131 RCPQCPLAFEALWRLQQHLFAkH 153
                    8*****************86655 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 2.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+k+F  ks+Lk+Hi++H
  KWMTBOMO09744 159 HKCDQCTKTFDKKSDLKKHISVH 181
                    79*******************99 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 8.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp+C+ +F++ksn++rH   H
  KWMTBOMO09744 187 HECPVCKAKFNDKSNFNRHTLLH 209
                    78*****************9998 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.0076
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    + Cp+Cg +F++  ++krH++
  KWMTBOMO09744 215 FCCPGCGSRFRQLASMKRHYQ 235
                    78*****************86 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.025
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    C +Cg+sF  +s L  H
  KWMTBOMO09744 256 CRICGMSFQYRSALLEH 272
                    **************999 PP

  == domain 8  score: 22.4 bits;  conditional E-value: 1.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C +C+k+F+ k+n+++H+ +H
  KWMTBOMO09744 582 FACRICNKVFNKKDNYTSHMAIH 604
                    78******************999 PP

  == domain 9  score: 19.3 bits;  conditional E-value: 1.8e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C +Cg++F  +s L++H+r  H
  KWMTBOMO09744 611 HVCAVCGQRFGYRSTLNKHMRAaH 634
                    79*******************888 PP

  == domain 10  score: 9.6 bits;  conditional E-value: 0.021
                    EEETTTTEEESS CS
        zf-C2H2   1 ykCpdCgksFkr 12 
                    ++C++C+++++ 
  KWMTBOMO09744 642 HRCHYCDRTYTA 653
                    79********86 PP