Silkworm Genome Informatics Database

Gene

KWMTBOMO09828

Pre Gene Modal

BGIBMGA013125

Annotation

PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr16(+):9929013-9945235 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.217

CDS

ATGGCCACGTTCAATAAAACACAGAATTTAAATTTCGAAAAAATATGCCGTGCTTGTTTGCAGATAAAAAAGGATATGAGGCCTTTATTCGAGCAATTAACCGCCACAATGTTGATGGGGATATCAAAAATTCAGGTGGCGGTAGGTGACGGTCTTCCCCCGCAGCTGTGCTTGCAGTGCGTCCACCAGATATCCCGCTGTCACGCCTTCAAGGATTTGGTCGAGCGAAATGACGTCACTTTACGAGAACAATACGCCAGGCACCTGGCCGAAGAGGCCATTAAAAGGGAGAACGAAGAGAAAGAGAAGCTCCTAACGATGACCGACCCTTCGTATATATCTCTAACGACGGACAACGATCCACTGACGAACCCAAATCAACTTTTGGAAGGGTTCTTCTCGACACCAGAACATCATAATTTAGAGGAGATAGTCACAACCGAAACCTTTGAAGTTGTAAAGACTGATTCGGAGCCTCCGCCGCCGACGAAAGACGACAGCGGCTTGAACTCCGACGAGGAGAACTACCTTCAGATGGTGGTGTTCCAAGCGACTTCAACGGTCACGCCGGGCCGGCACGTCTGCAACCTCTGCCACAAGGAGTTCAAGCACTCGCGTTGGCTCAAACAGCACATGAGGTCGCACACGAACTGGATCCGCGCCAACTGCAAGAAGCCGCCCATGTGCACGATATGTGAGAGAACTTTTAAGGGTCCGGGGATGTTGAAAATGCACATGCGCACGCACGAGGAGCGCCCTCCCAAGCAGCCCACCTGCTCCGTCTGCCAGCGGACCTTCGCAACCAAAACCTTGCTGTACCGCCACCGGCAGACCCACTTCGAACCCAAAACCCACCAGTGCACGGTCTGCGAGAAGAGGTTCTACAGCGGGTACGCGCTCAGGTCGCACATGGCGCGCCACCGCGGCGAGAGGCCCTACGTCTGCTCCATGTGCAACAAGAGCTTCTACAATCCCACAGATTTGAAGGTACATTTTCGACTGCACACCGGCGAGAAGCCATTGAAATGTACGGAGTGCAATAGAACGTTCCGCCGCCACTCCACGCTGTGTCAGCACATGAAGAAGCACCGGGGCATCAGGAACCACGTGTGCAACGTGTGCAATAAGGCGTTCTATGAGGTCTCCAAGTTGAACGCTCATATGAGGGTGCACACAGGCGAGCGCCCCTACGAGTGCCAGTACTGCGGGCGGCGGTTCGCCCAGCAGTCGGCGCTCATCTATCACAACCGGATCCACACCGGGGAGAAGCCGTACAGCTGCAAGCTCTGCTCGGCCAAGTTCACCACCTCGTCCGCCAGGAACAACCACATGATCACGCACACAGGGCACAAGAAGTACATCTGCAGCATCTGCTACAAGGGCTGCACCTCGAAGACGGAGCTTCGGGTGCACATCACGAAGCACACGGGGCAGAAGCTGTTTGAGTGCACGTACTGCTCGCAGCGGTTCAGTTCCGCTTCGTACCTGGCCGTGCACCGCCGGTACCACACCGGCGAGAAGAACCACCACTGTCAGATCTGCGGGAAGAGCTTCATTGAGGCAAGGTCGTACAAGAAACACATGAGTTCGCACGAGAACAAGGGCGAGTCGGAAGCGAACAACTCCGAGGCGGCCGCCGAGACCGCGCCCGCCGCGCACGAGCCCGCGCCCGCCGCCGCACCCGCCACCGCGCCCGCCGCCGACACGCAGGACGCAAGTACGTGA

Protein

MATFNKTQNLNFEKICRACLQIKKDMRPLFEQLTATMLMGISKIQVAVGDGLPPQLCLQCVHQISRCHAFKDLVERNDVTLREQYARHLAEEAIKRENEEKEKLLTMTDPSYISLTTDNDPLTNPNQLLEGFFSTPEHHNLEEIVTTETFEVVKTDSEPPPPTKDDSGLNSDEENYLQMVVFQATSTVTPGRHVCNLCHKEFKHSRWLKQHMRSHTNWIRANCKKPPMCTICERTFKGPGMLKMHMRTHEERPPKQPTCSVCQRTFATKTLLYRHRQTHFEPKTHQCTVCEKRFYSGYALRSHMARHRGERPYVCSMCNKSFYNPTDLKVHFRLHTGEKPLKCTECNRTFRRHSTLCQHMKKHRGIRNHVCNVCNKAFYEVSKLNAHMRVHTGERPYECQYCGRRFAQQSALIYHNRIHTGEKPYSCKLCSAKFTTSSARNNHMITHTGHKKYICSICYKGCTSKTELRVHITKHTGQKLFECTYCSQRFSSASYLAVHRRYHTGEKNHHCQICGKSFIEARSYKKHMSSHENKGESEANNSEAAAETAPAAHEPAPAAAPATAPAADTQDAST

Uniprot

A0A2A4K9V1 A0A2A4K9N4 A0A3S2M357 A0A194PIN9 A0A0N0PB22

Pubmed

26354079

EMBL

NWSH01000035 PCG80442.1 PCG80440.1 RSAL01000051 RVE50218.1 KQ459602 + More
KPI93187.1 KQ461178 KPJ07775.1

Proteomes

UP000218220 UP000283053 UP000053268 UP000053240

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4K9V1 A0A2A4K9N4 A0A3S2M357 A0A194PIN9 A0A0N0PB22

PDB

5V3M E-value=2.04172e-46, Score=470

KEGG

101743077 no KO assigned | (RefSeq) zinc finger protein 431-like

GO

GO:0005634 GO:0003676 GO:0008270 GO:0046872 GO:0005488 GO:0008565 GO:0015031 GO:0009258 GO:0016155 GO:0003824

Length:

574

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08605

Exp number, first 60 AAs:

0.08603

Total prob of N-in:

0.00627

outside

1 - 574

Pi

301.347736

Theta

175.500181

Tajima's D

2.386524

CLR

0.341065

CSRT

0.930103494825259

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics