HMM length of domain: 89 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	54.1	4.5	4.8e-17	2.2e-14	1	87	4	84
2	0.4	5.0	2.7	1.2e+03	26	82	124	183

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.8e-17
           THAP  1 CvvpgCknrkkkkskkkvsfhrfPkdkelrkkWlkaikrkdkkkkkkskk.srvCskHFeeekkkkkkeeekkeskkrrkLkkdavPt 87
                   Cvv+ Ck++++ k++  +sfh+fP+++ +rkkW++a++ ++++++ +  k s++Cs HF++e      + +  e+ +r++Lkk+a P 
  KWMTBOMO09628  4 CVVKWCKSHTDMKNS-GISFHKFPTNEIQRKKWITAVRLERNETNWTPCKnSTICSIHFQKE------DMYALENGSRVRLKKSALPI 84
                   ********8777654.4********************998666655333369*******544......556677889999******96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 2.7
           THAP  26 dkelrkkW...lkaikrkdkkkkkkskksrvCskHFeee.kkkkkkeeekkeskkrrkLkk 82 
                    + +lr+     +++i++++ k +k+++k  +C k  e++ k+++  ee  ++  +++k+kk
  KWMTBOMO09628 124 KANLRELHspnCSNIEQRKRKLEKTTDKVNICNKMHEKNnKEHDL-EEPGCSYMEEKKIKK 183
                    444444442223344444444444444599***999877422222.222223333333444 PP