HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	22.2	2.7	2.1e-06	0.00012	1	23	129	151
2	13.6	5.1	0.0011	0.067	2	23	158	179
3	18.1	2.2	4e-05	0.0024	1	23	185	208
4	24.8	0.9	3.1e-07	1.9e-05	1	23	215	237
5	12.7	0.1	0.0021	0.13	1	23	243	265
6	13.5	3.8	0.0012	0.072	1	23	274	299
7	17.4	1.7	6.7e-05	0.004	1	23	305	327
8	16.9	2.2	9.8e-05	0.0059	3	23	334	354

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ksF+r + L+ H+ +H
  KWMTBOMO09619 129 YTCTVCSKSFTRIYGLRYHMTKH 151
                    9********************99 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.0011
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cgk+F ++  L++H+ +H
  KWMTBOMO09619 158 LCSKCGKTFHNSGCLRQHLLSH 179
                    5******************999 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C+k++k++ +Lk H r+ H
  KWMTBOMO09619 185 FKCGFCNKTYKSRQSLKEHFRVaH 208
                    8********************999 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 3.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  Cgk+F+ ks L+ H+++H
  KWMTBOMO09619 215 FVCVTCGKRFTAKSTLVMHMKSH 237
                    89********************9 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 0.0021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp C+k ++r   L+ H  +H
  KWMTBOMO09619 243 FACPSCPKAYTRAIYLREHSIVH 265
                    78*****************8877 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 0.0012
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    +kC+  dC +sF +k++L +H    H
  KWMTBOMO09619 274 FKCSnkDCERSFATKHSLLVHFAHtH 299
                    89*******************87666 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 6.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C k F + s Lk H+ +H
  KWMTBOMO09619 305 HKCTTCFKGFATASGLKMHMESH 327
                    79******************999 PP

  == domain 8  score: 16.9 bits;  conditional E-value: 9.8e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk+ ++k  L++Hi+tH
  KWMTBOMO09619 334 CNICGKKLSNKRVLQKHIKTH 354
                    ********************9 PP