HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	24.3	0.4	4.5e-07	2.7e-05	1	23	72	94
2	26.1	0.5	1.2e-07	7.3e-06	1	23	100	122
3	18.0	0.1	4.5e-05	0.0027	1	23	128	152
4	15.5	0.8	0.00028	0.017	1	23	162	185
5	12.5	0.1	0.0025	0.15	3	23	201	221

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.5e-07
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C  C+k F+++ nL++H+r+H
  KWMTBOMO09820 72 FVCAFCNKAFSQSNNLRAHLRIH 94
                   89********************9 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++Cgk F++  nL++H r H
  KWMTBOMO09820 100 FKCSECGKAFTQLTNLNNHVRLH 122
                    8********************99 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 4.5e-05
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    ++Cp  +C+k + +  nL++H+++H
  KWMTBOMO09820 128 FVCPepGCDKAYAQVTNLNQHRKRH 152
                    89**********************9 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 0.00028
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++Cg+sF ++ ++ +H+r  H
  KWMTBOMO09820 162 YDCTVCGESFQQRNQMYTHRREvH 185
                    89*******************988 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 0.0025
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+++F++  +L +H   H
  KWMTBOMO09820 201 CTLCDMTFPNERLLLQHAAQH 221
                    *****************9887 PP