HMM length of domain: 198 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	-2.2	0.0	0.81	2.7e+03	177	193	49	65
2	127.5	30.6	1.5e-40	5.1e-37	1	197	135	327

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.81
  TRAM_LAG1_CLN8 177 iflilllvLqllnlyWf 193
                     + l+l+++  +l  yWf
   KWMTBOMO09500  49 LALVLIVLRHVLEKYWF 65 
                     23344444466666776 PP

  == domain 2  score: 127.5 bits;  conditional E-value: 1.5e-40
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp......elwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvl 89 
                     kf+e+++++ +yl  +++g+++l++++      +++ gyp++ +++    + +yy+++ +++++ l ++ +++ krkdf++m++Hhi+t++ll++
   KWMTBOMO09500 135 KFCENCWRCSFYLYNFSYGMFILWEKTwlwdidQCYIGYPHQGVTG---DVWWYYMISSAFYWS-LTISQFWDVKRKDFWQMFVHHIATIALLSF 225
                     79************************97777777777779888888...999**********88.9999999*********************** PP

  TRAM_LAG1_CLN8  90 syvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstaplwlpliflilllv 184
                     s+v nl+r+g++vll+h+  d+fl+++k  +y+ ++ ++++++lf   +f+l+++v+R  ++p++i++s+   a+  +   +++ ++if+ ll++
   KWMTBOMO09500 226 SWVCNLHRIGTLVLLTHDCADIFLEAAKATKYA-SY-QKLCDFLF--TIFTLLWIVTRNGIYPFYIIWSTSIRAP--MLLPMFPAYYIFNSLLCL 314
                     *********************************.77.788*****..************************8887..66678************* PP

  TRAM_LAG1_CLN8 185 LqllnlyWfyliv 197
                     L++l+++W++liv
   KWMTBOMO09500 315 LLALHMVWTWLIV 327
                     ************8 PP