Gene

KWMTBOMO09500

Annotation

PREDICTED:_ceramide_synthase_6-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr16(+):2566708-2603100      View in EpiBrowser

Transcription factor

TRAM_LAG1_CLN8

Location in the cell

PlasmaMembrane   Reliability : 4.202

CDS

ATGAATACGTTACGATTATTATTAGACACGTTTTGGGATGAATCTGTTTGGTTGCCTCCTAATACTACATGGGAAGATCTGGAGCCGGGTCCTGACAAAGTCGTGATTTACAATGACTACCGGCATCTTTTTTATCCGTTGCCGCTGGCGTTGGTGCTTATAGTATTACGGCATGTACTGGAGAAGTACTGGTTTGCACCGTTTGGAAAATCAATAGGTATTAAAAATACCAGACCAAAGAAAGCACCTAACAATCCTAAATTAGAAAATGCATATCAAGCATCGTCCAAACTGAAACATAAACAGATATGTGCACTGGCGAAGCAAGTGGACTTATCGGAGAGACAGGTGGAAAGATGGTGGCGTTTACGTCGCAGCCAAGACAAGCCCTCCACCCTGGTCAAGTTCTGCGAGAACTGTTGGAGATGCAGCTTCTATTTGTACAACTTCTCGTACGGTATGTTCATACTATGGGAGAAAACTTGGCTGTGGGATATCGACCAGTGCTACATTGGCTATCCCCATCAGGGCGTGACCGGTGACGTGTGGTGGTACTACATGATATCGTCCGCCTTCTATTGGTCGCTGACCATCTCGCAGTTCTGGGACGTCAAGCGCAAGGACTTCTGGCAGATGTTCGTCCACCACATCGCCACCATAGCGCTGCTCTCGTTCAGCTGGGTCTGCAACCTGCACCGGATCGGAACCCTGGTTCTGCTGACGCACGACTGCGCGGACATATTCTTGGAGGCGGCCAAGGCCACGAAATACGCGAGCTACCAGAAGCTATGCGATTTCCTTTTCACGATCTTCACTCTGTTATGGATAGTGACGAGGAATGGTATTTATCCGTTCTATATTATTTGGAGCACGTCAATCCGAGCACCGATGTTGCTTCCAATGTTCCCTGCCTATTACATATTCAATTCCCTGCTCTGTTTGCTGTTGGCCCTGCACATGGTTTGGACCTGGCTCATAGTTCAAGTCGCCTACAAGTCCATAAGCGCCGGGCAGATGGAAGGCGACATTAGAAGCTCCAGTTCGGATATCAGTGACAGCTCTCATCATTCAAACCACAGCACGCCCAATCGCGTTCGAAGTAAAAAAGACGCGTAA

Protein

MNTLRLLLDTFWDESVWLPPNTTWEDLEPGPDKVVIYNDYRHLFYPLPLALVLIVLRHVLEKYWFAPFGKSIGIKNTRPKKAPNNPKLENAYQASSKLKHKQICALAKQVDLSERQVERWWRLRRSQDKPSTLVKFCENCWRCSFYLYNFSYGMFILWEKTWLWDIDQCYIGYPHQGVTGDVWWYYMISSAFYWSLTISQFWDVKRKDFWQMFVHHIATIALLSFSWVCNLHRIGTLVLLTHDCADIFLEAAKATKYASYQKLCDFLFTIFTLLWIVTRNGIYPFYIIWSTSIRAPMLLPMFPAYYIFNSLLCLLLALHMVWTWLIVQVAYKSISAGQMEGDIRSSSSDISDSSHHSNHSTPNRVRSKKDA

Uniprot

A0A1E1VY27   A0A1E1W2Q5   A0A2A4JIT0   A0A1E1WFG3   A0A1E1W3C8   A0A3S2LL92   + More
A0A2A4JGY2   A0A2W1BHT5   A0A437BFD0   A0A2H1VPH1   A0A194Q6Q3   A0A1L8DUL0   A0A336MAZ5   A0A1Q3G272   E2C5U9   A0A1Q3G2A4   A0A1Q3G277   A0A1Q3G2E4   D6WYR1   A0A1B0FGD7   A0A1B0BJV0   A0A1A9VC72   A0A0L7R4X8   A0A1I8MJC5   A0A067RQ48   A0A026WNX4   W8C680   A0A154PDG5   A0A182V3Z5   Q7PY62   A0A2C9GPW4   U5EU05   A0A2C9H886   Q16WU6   A0A158NR19   A0A182QKD2   E2ADT5   K7IN59   A0A195E5N7   A0A195B130   F4WP94   A0A182G1G4   B4L5F1   A0A0M3QYZ5   A0A1Y1K4Z9   A0A182PQZ9   B4JNE6   A0A2M4CIX5   A0A0A1WHQ7   A0A2M4CIV4   Q16WU5   T1DK73   A0A0K8U7V5   B4MAX9   A0A2R7VUW9   A0A2M4AM46   A0A2M4BQA1   A0A2M4BQ26   A0A2M4AMM7   A0A0C9REG6   A0A1W4VFJ0   A0A2M3Z6W5   A0A2M3Z6T8   A0A0P8YKM5   A0A0Q9WDH8   Q29GF6   A0A232F7B8   B4NE76   B4I0D3   B4HB90   Q9W423   B4PYQ4   A0A3B0KEC9   B3NXQ1   A0A2A3E101   R4G7Z2   A0A151ICM1   A0A195EUJ7   A0A2S2P1G1   A0A1L8EBK0   C4WXB7   A0A1L8EB48   A0A1B6DSL3   A0A023F8K1   A0A0V0GAE7   A0A224XSH7   A0A069DTC4   J9K7R9   A0A1B6DU08   A0A0A9XX01   V5GK93   A0A146L0Z9   A0A1B6KN89   A0A1B6F8B2   A0A1B6IBE6   T1E2R0   A0A2W1BKB4   A0A1B0CIB7   A0A0N1IFL4   A0A2H1VPF7  

Pubmed

28756777    26354079    20798317    18362917    19820115    25315136    + More
24845553    24508170    24495485    12364791    14747013    17210077    17510324    21347285    20075255    21719571    26483478    17994087    28004739    25830018    18057021    15632085    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25474469    26334808    25401762    26823975    24330624   

EMBL

GDQN01011470    JAT79584.1    GDQN01009798    GDQN01001145    JAT81256.1    JAT89909.1    + More
NWSH01001411    PCG71333.1    GDQN01005366    JAT85688.1    GDQN01009574    JAT81480.1    RSAL01000071    RVE49134.1    PCG71335.1    KZ150116    PZC73275.1    RVE49133.1    ODYU01003668    SOQ42723.1    KQ459582    KPI99070.1    GFDF01003974    JAV10110.1    UFQS01000320    UFQT01000320    SSX02850.1    SSX23218.1    GFDL01001117    JAV33928.1    GL452834    EFN76685.1    GFDL01001113    JAV33932.1    GFDL01001142    JAV33903.1    GFDL01001119    JAV33926.1    KQ971357    EFA08405.2    CCAG010008765    JXJN01015636    JXJN01015637    KQ414657    KOC65826.1    KK852531    KDR21874.1    KK107139    EZA57715.1    GAMC01001277    JAC05279.1    KQ434879    KZC09949.1    AAAB01008987    EAA01235.5    APCN01000913    GANO01002545    JAB57326.1    CH477554    EAT39065.1    ADTU01023745    ADTU01023746    AXCN02000314    GL438820    EFN68447.1    KQ979608    KYN20478.1    KQ976691    KYM77909.1    GL888243    EGI64075.1    JXUM01038484    JXUM01038485    JXUM01038486    KQ561167    KXJ79489.1    CH933811    EDW06410.1    CP012528    ALC48479.1    GEZM01092745    JAV56473.1    CH916371    EDV92239.1    GGFL01001118    MBW65296.1    GBXI01015910    JAC98381.1    GGFL01001114    MBW65292.1    EAT39066.1    GAMD01001086    JAB00505.1    GDHF01029595    GDHF01024706    JAI22719.1    JAI27608.1    CH940655    EDW66388.1    KK854101    PTY11296.1    GGFK01008520    MBW41841.1    GGFJ01006043    MBW55184.1    GGFJ01006044    MBW55185.1    GGFK01008537    MBW41858.1    GBYB01011557    JAG81324.1    GGFM01003479    MBW24230.1    GGFM01003486    MBW24237.1    CH902621    KPU81618.1    KRF82662.1    KRF82663.1    KRF82664.1    CH379064    EAL32153.2    NNAY01000810    OXU26390.1    CH964239    EDW82045.1    CH480819    EDW52964.1    CH479248    EDW37902.1    AE014298    AY061255    AY066020    AAF46137.2    AAG22409.2    AAL28803.1    AAL57756.1    CM000162    EDX00990.1    OUUW01000011    SPP86670.1    CH954180    EDV47352.1    KZ288468    PBC25378.1    ACPB03006224    GAHY01001877    JAA75633.1    KQ978052    KYM97789.1    KQ981965    KYN31831.1    GGMR01010684    MBY23303.1    GFDG01002810    JAV15989.1    AK342547    BAH72537.1    GFDG01002809    JAV15990.1    GEDC01008653    JAS28645.1    GBBI01001001    JAC17711.1    GECL01000985    JAP05139.1    GFTR01005495    JAW10931.1    GBGD01001888    JAC87001.1    ABLF02015011    GEDC01008131    JAS29167.1    GBHO01021809    GBRD01010463    GBRD01010462    GDHC01003308    JAG21795.1    JAG55361.1    JAQ15321.1    GALX01003992    JAB64474.1    GDHC01016990    JAQ01639.1    GEBQ01027049    JAT12928.1    GECZ01023343    JAS46426.1    GECU01023441    JAS84265.1    GALA01001070    JAA93782.1    PZC73276.1    AJWK01013182    AJWK01013183    AJWK01013184    KQ460651    KPJ13010.1    SOQ42721.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000008237    UP000007266    UP000092444    + More
UP000092460    UP000078200    UP000053825    UP000095301    UP000027135    UP000053097    UP000076502    UP000075903    UP000007062    UP000075840    UP000076407    UP000008820    UP000005205    UP000075886    UP000000311    UP000002358    UP000078492    UP000078540    UP000007755    UP000069940    UP000249989    UP000009192    UP000092553    UP000075885    UP000001070    UP000008792    UP000192221    UP000007801    UP000001819    UP000215335    UP000007798    UP000001292    UP000008744    UP000000803    UP000002282    UP000268350    UP000008711    UP000242457    UP000015103    UP000078542    UP000078541    UP000007819    UP000092461    UP000053240   

Pfam

PF03798   TRAM_LAG1_CLN8        + More
PF00046   Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR006634   TLC-dom       
IPR009057   Homeobox-like_sf       
IPR016439   Lag1/Lac1-like       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A1E1VY27   A0A1E1W2Q5   A0A2A4JIT0   A0A1E1WFG3   A0A1E1W3C8   A0A3S2LL92   + More
A0A2A4JGY2   A0A2W1BHT5   A0A437BFD0   A0A2H1VPH1   A0A194Q6Q3   A0A1L8DUL0   A0A336MAZ5   A0A1Q3G272   E2C5U9   A0A1Q3G2A4   A0A1Q3G277   A0A1Q3G2E4   D6WYR1   A0A1B0FGD7   A0A1B0BJV0   A0A1A9VC72   A0A0L7R4X8   A0A1I8MJC5   A0A067RQ48   A0A026WNX4   W8C680   A0A154PDG5   A0A182V3Z5   Q7PY62   A0A2C9GPW4   U5EU05   A0A2C9H886   Q16WU6   A0A158NR19   A0A182QKD2   E2ADT5   K7IN59   A0A195E5N7   A0A195B130   F4WP94   A0A182G1G4   B4L5F1   A0A0M3QYZ5   A0A1Y1K4Z9   A0A182PQZ9   B4JNE6   A0A2M4CIX5   A0A0A1WHQ7   A0A2M4CIV4   Q16WU5   T1DK73   A0A0K8U7V5   B4MAX9   A0A2R7VUW9   A0A2M4AM46   A0A2M4BQA1   A0A2M4BQ26   A0A2M4AMM7   A0A0C9REG6   A0A1W4VFJ0   A0A2M3Z6W5   A0A2M3Z6T8   A0A0P8YKM5   A0A0Q9WDH8   Q29GF6   A0A232F7B8   B4NE76   B4I0D3   B4HB90   Q9W423   B4PYQ4   A0A3B0KEC9   B3NXQ1   A0A2A3E101   R4G7Z2   A0A151ICM1   A0A195EUJ7   A0A2S2P1G1   A0A1L8EBK0   C4WXB7   A0A1L8EB48   A0A1B6DSL3   A0A023F8K1   A0A0V0GAE7   A0A224XSH7   A0A069DTC4   J9K7R9   A0A1B6DU08   A0A0A9XX01   V5GK93   A0A146L0Z9   A0A1B6KN89   A0A1B6F8B2   A0A1B6IBE6   T1E2R0   A0A2W1BKB4   A0A1B0CIB7   A0A0N1IFL4   A0A2H1VPF7  

PDB

2CQX     E-value=0.000532911,     Score=102

KEGG

101735559    K04710 ceramide synthetase [EC:2.3.1.24] | (RefSeq) ceramide synthase 6-like

PATHWAY

00600    Sphingolipid metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0016021   GO:0003677   GO:0046513   GO:0005783   GO:0050291   GO:0046889   GO:0006641   GO:0032933   GO:0005637   GO:0050995   GO:0019898   GO:0005856   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

PANTHER

PTHR12560  

Subcellular location

Nucleus  

Length:

371

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

105.16852

Exp number, first 60 AAs:

15.74489

Total prob of N-in:

0.23572

POSSIBLE N-term signal

sequence

outside

1  -  42

TMhelix

43  -  60

inside

61  -  181

TMhelix

182  -  204

outside

205  -  208

TMhelix

209  -  231

inside

232  -  266

TMhelix

267  -  289

outside

290  -  303

TMhelix

304  -  326

inside

327  -  371

 

 

Pi

176.819795

Theta

163.921972

Tajima's D

0.014222

CLR

136.723506

CSRT

0.372281385930703

Interpretation

Uncertain