SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09500
Annotation
PREDICTED:_ceramide_synthase_6-like_isoform_X1_[Bombyx_mori]
Transcription factor
Location in the cell
PlasmaMembrane   Reliability : 4.202
 

Sequence

CDS
ATGAATACGTTACGATTATTATTAGACACGTTTTGGGATGAATCTGTTTGGTTGCCTCCTAATACTACATGGGAAGATCTGGAGCCGGGTCCTGACAAAGTCGTGATTTACAATGACTACCGGCATCTTTTTTATCCGTTGCCGCTGGCGTTGGTGCTTATAGTATTACGGCATGTACTGGAGAAGTACTGGTTTGCACCGTTTGGAAAATCAATAGGTATTAAAAATACCAGACCAAAGAAAGCACCTAACAATCCTAAATTAGAAAATGCATATCAAGCATCGTCCAAACTGAAACATAAACAGATATGTGCACTGGCGAAGCAAGTGGACTTATCGGAGAGACAGGTGGAAAGATGGTGGCGTTTACGTCGCAGCCAAGACAAGCCCTCCACCCTGGTCAAGTTCTGCGAGAACTGTTGGAGATGCAGCTTCTATTTGTACAACTTCTCGTACGGTATGTTCATACTATGGGAGAAAACTTGGCTGTGGGATATCGACCAGTGCTACATTGGCTATCCCCATCAGGGCGTGACCGGTGACGTGTGGTGGTACTACATGATATCGTCCGCCTTCTATTGGTCGCTGACCATCTCGCAGTTCTGGGACGTCAAGCGCAAGGACTTCTGGCAGATGTTCGTCCACCACATCGCCACCATAGCGCTGCTCTCGTTCAGCTGGGTCTGCAACCTGCACCGGATCGGAACCCTGGTTCTGCTGACGCACGACTGCGCGGACATATTCTTGGAGGCGGCCAAGGCCACGAAATACGCGAGCTACCAGAAGCTATGCGATTTCCTTTTCACGATCTTCACTCTGTTATGGATAGTGACGAGGAATGGTATTTATCCGTTCTATATTATTTGGAGCACGTCAATCCGAGCACCGATGTTGCTTCCAATGTTCCCTGCCTATTACATATTCAATTCCCTGCTCTGTTTGCTGTTGGCCCTGCACATGGTTTGGACCTGGCTCATAGTTCAAGTCGCCTACAAGTCCATAAGCGCCGGGCAGATGGAAGGCGACATTAGAAGCTCCAGTTCGGATATCAGTGACAGCTCTCATCATTCAAACCACAGCACGCCCAATCGCGTTCGAAGTAAAAAAGACGCGTAA
Protein
MNTLRLLLDTFWDESVWLPPNTTWEDLEPGPDKVVIYNDYRHLFYPLPLALVLIVLRHVLEKYWFAPFGKSIGIKNTRPKKAPNNPKLENAYQASSKLKHKQICALAKQVDLSERQVERWWRLRRSQDKPSTLVKFCENCWRCSFYLYNFSYGMFILWEKTWLWDIDQCYIGYPHQGVTGDVWWYYMISSAFYWSLTISQFWDVKRKDFWQMFVHHIATIALLSFSWVCNLHRIGTLVLLTHDCADIFLEAAKATKYASYQKLCDFLFTIFTLLWIVTRNGIYPFYIIWSTSIRAPMLLPMFPAYYIFNSLLCLLLALHMVWTWLIVQVAYKSISAGQMEGDIRSSSSDISDSSHHSNHSTPNRVRSKKDA

Summary

EMBL
GDQN01011470    JAT79584.1    GDQN01009798    GDQN01001145    JAT81256.1    JAT89909.1    + More
NWSH01001411    PCG71333.1    GDQN01005366    JAT85688.1    GDQN01009574    JAT81480.1    RSAL01000071    RVE49134.1    PCG71335.1    KZ150116    PZC73275.1    RVE49133.1    ODYU01003668    SOQ42723.1    KQ459582    KPI99070.1    GFDF01003974    JAV10110.1    UFQS01000320    UFQT01000320    SSX02850.1    SSX23218.1    GFDL01001117    JAV33928.1    GL452834    EFN76685.1    GFDL01001113    JAV33932.1    GFDL01001142    JAV33903.1    GFDL01001119    JAV33926.1    KQ971357    EFA08405.2    CCAG010008765    JXJN01015636    JXJN01015637    KQ414657    KOC65826.1    KK852531    KDR21874.1    KK107139    EZA57715.1    GAMC01001277    JAC05279.1    KQ434879    KZC09949.1    AAAB01008987    EAA01235.5    APCN01000913    GANO01002545    JAB57326.1    CH477554    EAT39065.1    ADTU01023745    ADTU01023746    AXCN02000314    GL438820    EFN68447.1    KQ979608    KYN20478.1    KQ976691    KYM77909.1    GL888243    EGI64075.1    JXUM01038484    JXUM01038485    JXUM01038486    KQ561167    KXJ79489.1    CH933811    EDW06410.1    CP012528    ALC48479.1    GEZM01092745    JAV56473.1    CH916371    EDV92239.1    GGFL01001118    MBW65296.1    GBXI01015910    JAC98381.1    GGFL01001114    MBW65292.1    EAT39066.1    GAMD01001086    JAB00505.1    GDHF01029595    GDHF01024706    JAI22719.1    JAI27608.1    CH940655    EDW66388.1    KK854101    PTY11296.1    GGFK01008520    MBW41841.1    GGFJ01006043    MBW55184.1    GGFJ01006044    MBW55185.1    GGFK01008537    MBW41858.1    GBYB01011557    JAG81324.1    GGFM01003479    MBW24230.1    GGFM01003486    MBW24237.1    CH902621    KPU81618.1    KRF82662.1    KRF82663.1    KRF82664.1    CH379064    EAL32153.2    NNAY01000810    OXU26390.1    CH964239    EDW82045.1    CH480819    EDW52964.1    CH479248    EDW37902.1    AE014298    AY061255    AY066020    AAF46137.2    AAG22409.2    AAL28803.1    AAL57756.1    CM000162    EDX00990.1    OUUW01000011    SPP86670.1    CH954180    EDV47352.1    KZ288468    PBC25378.1    ACPB03006224    GAHY01001877    JAA75633.1    KQ978052    KYM97789.1    KQ981965    KYN31831.1    GGMR01010684    MBY23303.1    GFDG01002810    JAV15989.1    AK342547    BAH72537.1    GFDG01002809    JAV15990.1    GEDC01008653    JAS28645.1    GBBI01001001    JAC17711.1    GECL01000985    JAP05139.1    GFTR01005495    JAW10931.1    GBGD01001888    JAC87001.1    ABLF02015011    GEDC01008131    JAS29167.1    GBHO01021809    GBRD01010463    GBRD01010462    GDHC01003308    JAG21795.1    JAG55361.1    JAQ15321.1    GALX01003992    JAB64474.1    GDHC01016990    JAQ01639.1    GEBQ01027049    JAT12928.1    GECZ01023343    JAS46426.1    GECU01023441    JAS84265.1    GALA01001070    JAA93782.1    PZC73276.1    AJWK01013182    AJWK01013183    AJWK01013184    KQ460651    KPJ13010.1    SOQ42721.1   
Pfam
PF03798   TRAM_LAG1_CLN8        + More
PF00046   Homeodomain
Interpro
IPR001356   Homeobox_dom        + More
IPR006634   TLC-dom       
IPR009057   Homeobox-like_sf       
IPR016439   Lag1/Lac1-like       
SUPFAM
SSF46689   SSF46689       
PDB
2CQX     E-value=0.000532911,     Score=102

Ontologies

Topology

Subcellular location
Nucleus  
Length:
371
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
105.16852
Exp number, first 60 AAs:
15.74489
Total prob of N-in:
0.23572
POSSIBLE N-term signal
sequence
outside
1  -  42
TMhelix
43  -  60
inside
61  -  181
TMhelix
182  -  204
outside
205  -  208
TMhelix
209  -  231
inside
232  -  266
TMhelix
267  -  289
outside
290  -  303
TMhelix
304  -  326
inside
327  -  371
 
 

Population Genetic Test Statistics

Pi
176.819795
Theta
163.921972
Tajima's D
0.014222
CLR
136.723506
CSRT
0.372281385930703
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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