HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.3	0.4	0.00033	0.02	1	23	157	179
2	10.9	0.6	0.0081	0.49	2	23	186	207
3	17.2	0.2	8.1e-05	0.0049	2	19	214	231
4	5.3	0.0	0.49	29	2	23	238	260
5	8.9	0.4	0.036	2.1	3	23	270	290

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 0.00033
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ sF r s++++H  +H
  KWMTBOMO09382 157 YQCTVCPASFQRVSEYRTHVESH 179
                    9******************9998 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0081
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C  Cg  F ++  L  H+ +H
  KWMTBOMO09382 186 ACWTCGAQFATRTALHDHLASH 207
                    6******************999 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 8.1e-05
                    EETTTTEEESSHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                    +C +Cg +F r+s+L+rH
  KWMTBOMO09382 214 TCYVCGTTFQRQSELRRH 231
                    7***************** PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.49
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp Cg    ++  L +H    H
  KWMTBOMO09382 238 RCPSCGAELADRAALSAHAAAaH 260
                    8*****************87655 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.036
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp C +sF++ ++L +H+ +H
  KWMTBOMO09382 270 CPCCFRSFPDGELLAAHLLRH 290
                    77799***************9 PP