HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.6	0.2	0.81	48	8	23	131	146
2	16.2	7.1	0.00017	0.01	1	23	152	175
3	12.8	0.1	0.002	0.12	1	23	189	211
4	10.3	0.0	0.012	0.74	3	23	218	238
5	10.1	0.1	0.014	0.83	1	23	244	267

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.81
                    EEESSHHHHHHHHHCC CS
        zf-C2H2   8 ksFkrksnLkrHirtH 23 
                    k +++   L+rH rtH
  KWMTBOMO09006 131 KGYSSITKLTRHVRTH 146
                    77888999*******9 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 0.00017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ C+ksF  +++++rH+r  H
  KWMTBOMO09006 152 YPCKFCNKSFVKSHHYTRHLRAkH 175
                    99*******************888 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.002
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+  F+++++L  H  +H
  KWMTBOMO09006 189 FRCEQCDDAFSTQDDLIYHSAIH 211
                    89*****************8877 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.012
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp C ++F + +  ++Hi++H
  KWMTBOMO09006 218 CPLCQEKFDDVDAVTAHIKSH 238
                    ********************9 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.014
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C   F+ ++ L +H  t H
  KWMTBOMO09006 244 FMCDYCELIFTEREKLDNHVATvH 267
                    78******************9999 PP