Silkworm Genome Informatics Database

Gene

KWMTBOMO09369

Pre Gene Modal

BGIBMGA002156

Annotation

PREDICTED:_transcription_factor_GATA-6-like_isoform_X3_[Amyelois_transitella]

Location

Bomo_Chr15(-):18303528-18332323 View in EpiBrowser

Full name

Transcription factor BCFI

Alternative Name

BmGATA-beta

Transcription factor

zf-GATA

Location in the cell

Nuclear Reliability : 4.505

CDS

ATGCGACAGCAAAAACAAAGCCGGCCCCATGGTGCCCGGGCCGCAACAGAGCATCAGTTGTCGCCCGGGTTTGTTTACTTACCGCGCGACTCTCGCCCCGAGCGCATGTGTTTGTTCTCCGTGCTCAGCATGCTGCACGACGCCTGGCCCTCTTCCTGGGACAAGGCCTTCTCTATCGACTTGGAAACACTCATAGCTGAGATCAACAACAACTGTATGAAAGAAGGCGCGGCGGAGTGCGGCTACGCCCCCGGGGCCGGAGGCGGGCTGTCGCCGGCGGCGCGCAGCTACCAGGAGCTGCGGCCCGCACACGCGCGCGACATGCAGCCCTACGCGCACCTCGACGACGCGCTCTTCAAGCCGCCGACCCCGGGCGCCGCCTCCACCGACGGCGTCTACCTGCGCCGGAGTCCCGAGCTCAGCCCCTCGCCGGAGCGCCGCGACGACTACCGCCCGCCGGCGCCCCTCCACTACGAGCACTACGCGCCGCCGCCTCCCTACTCGCACGACCATCACCACCACCTCGAGCAAGGCGGAGGCGGCAACGGCGCGGCGAGCAGCGTGTACACGCGGTGCGCCTTCAACAGCGCCGCGCCATACTTCACCAACGGAGCCGACCTCTCCGCCCAGCCGCAGCTCTGGACCGCGTCCGGAGGGTCTCCGAGCTACGGCAGCAACGCGATACTGGCGGACGAATACGCCGAGAGCGCCGCGGAGGGCGGGGGGTCCCTGCCGTCTTTCAACACGCGGTTCGGCGGCGCCTTCGCCTGCGCCACCTCGCGGCCCTCCACCGTCTACGGAGCGCCAGCTCTGGCCTCCAACGCGTACGCACACCAGGAGGGGTGGAGCCTGGAGAGCAACCGCCGGCCGCAGCTCTCCGCAGCCGACCGACTCTCTGCAATGGCCGCGGAGGGGGCCCCGTCGGGCGCGGATTTCTACAAGGGCTTCCTGTTAAATGGCATCCAGGCGTCGCACGCTCTGCCCGCGCCGCAGCCGCACGCGGGTCCCAATCCTTCTGACTACAAGCAGAAGAAAGGGATGGGCGCCAAAAGACCGGGCACGATGTGCACCAACTGCCAGACCACGGCGACGTCCCTGTGGCGCCGCAACGTGCAGGGCGAGACGGTCTGCAACGCGTGCGGCCTCTACTTCAAGCTGCACAACGTCAACCGACCTCTCACCATGAAGAAGGACTCCATTCAGACGAGAAAACGGAAACCAAAGAACAGTAATATTAAGGCTGACAGAAGCGCTAAGGCAGTACAGCGAGCCGTCTCCGCGGGCATCAAGATGGAGAGCATATTGGAGTCGGCGCGCCGCTCTCCGCCGCGCCTGGGCTACTACGTGCAGTCGGCGGAGGGCATGAAGCTGGAGGAGCCGCAGCACCACGTCATGTACATCGGAGTGCCGGAGCTGGGCCCGCACAAGGCCGCGCCGCACCACGACCACTCCGCCGTGTCGCTCGCCAGCTGA

Protein

MRQQKQSRPHGARAATEHQLSPGFVYLPRDSRPERMCLFSVLSMLHDAWPSSWDKAFSIDLETLIAEINNNCMKEGAAECGYAPGAGGGLSPAARSYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHYEHYAPPPPYSHDHHHHLEQGGGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAILADEYAESAAEGGGSLPSFNTRFGGAFACATSRPSTVYGAPALASNAYAHQEGWSLESNRRPQLSAADRLSAMAAEGAPSGADFYKGFLLNGIQASHALPAPQPHAGPNPSDYKQKKGMGAKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVSLAS

Keywords

Activator Alternative splicing Complete proteome DNA-binding Metal-binding Nucleus Reference proteome Repeat Transcription Transcription regulation Zinc Zinc-finger

Feature

chain Transcription factor BCFI
splice variant In isoform 3.

Uniprot

A0A2A4K6C6 P52167-3

Pubmed

8144656 7853403

EMBL

NWSH01000122 PCG79323.1 L27451 U16320 U16274

Proteomes

UP000218220 UP000005204

PRIDE

P52167

Pfam

PF00320 GATA

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR039355   Transcription_factor_GATA
IPR000679   Znf_GATA

Gene 3D

3.30.50.10

CDD

cd00202 ZnF_GATA

ProteinModelPortal

A0A2A4K6C6 P52167-3

PDB

4HCA E-value=1.97647e-20, Score=245

KEGG

693014 no KO assigned | (RefSeq) Gata-beta, BmGATAB, BmoGATA-B, Gata-b, Gatab; transcription factor BCFI

GO

GO:0008270 GO:0003700 GO:0005634 GO:0043565 GO:0006355 GO:0005200 GO:0003676 GO:0004812 GO:0006418 GO:0000049 GO:0016876

PANTHER

PTHR10071

Subcellular location

Nucleus

Length:

490

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00934999999999996

Exp number, first 60 AAs:

0.00638

Total prob of N-in:

0.01656

outside

1 - 490

Pi

251.422824

Theta

196.910705

Tajima's D

0.759437

CLR

0.177622

CSRT

0.585970701464927

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics