HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.3	2.5	0.11	6.8	1	23	238	261
2	4.9	1.8	0.64	38	1	23	268	290
3	16.1	0.3	0.00018	0.011	2	23	297	318
4	17.3	3.4	7.3e-05	0.0044	1	23	324	346
5	14.3	3.2	0.00067	0.04	1	23	352	374
6	18.5	2.5	3.1e-05	0.0019	1	23	380	402
7	18.6	1.3	3e-05	0.0018	1	20	421	440

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.11
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C+ ++++   L+rH ++ H
  KWMTBOMO09364 238 HQCDQCTNRYTSLVRLERHKQIkH 261
                    79*****************99988 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.64
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg  +k+k     Hi  H
  KWMTBOMO09364 268 YICEICGAHYKHKRACDIHIALH 290
                    89**********99888888777 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 0.00018
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++C+k F++k  L+rH ++H
  KWMTBOMO09364 297 KCEECNKLFPSKNALQRHNNIH 318
                    8*****************9988 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 7.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ CgksF + s++k H  +H
  KWMTBOMO09364 324 YQCDLCGKSFIHTSSFKMHKLSH 346
                    9******************9998 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 0.00067
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg    ++s+LkrH r+H
  KWMTBOMO09364 352 HSCDVCGLALMTRSHLKRHKRVH 374
                    68********************9 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 3.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  Cgk+F+ ++nL++H ++H
  KWMTBOMO09364 380 HECALCGKRFSERYNLMAHAKSH 402
                    68********************6 PP

  == domain 7  score: 18.6 bits;  conditional E-value: 3e-05
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    ++C+ C++++ r+++L+rH+
  KWMTBOMO09364 421 FRCHFCPERYERRYMLERHM 440
                    89*****************9 PP