HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.1	0.3	2.4	1.4e+02	5	23	149	168
2	13.2	0.6	0.0015	0.092	5	23	183	204
3	25.9	0.2	1.4e-07	8.4e-06	1	23	210	234
4	12.3	2.2	0.0029	0.17	1	23	240	264
5	21.9	4.3	2.6e-06	0.00016	1	23	270	294

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 2.4
                    TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                     C+k F++ ++ ++H+ + H
  KWMTBOMO09032 149 LCNKLFSSMHEIVTHLTVeH 168
                    6**************98888 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.0015
                    TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCg...ksFkrksnLkrHirtH 23 
                    +C+   ++Fk k+ L++Hir+H
  KWMTBOMO09032 183 GCSrngRPFKAKYKLVNHIRVH 204
                    677777***************9 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 1.4e-07
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    ++Cp  +Cgk+F r++nLk H rtH
  KWMTBOMO09032 210 FPCPfpGCGKVFARSENLKIHKRTH 234
                    89**********************9 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.0029
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    +kC+  +C+++F ++s+ k+H  +H
  KWMTBOMO09032 240 FKCEyaGCDRRFANSSDRKKHSHVH 264
                    89*******************8877 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 2.6e-06
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y C   +C+ks++++s+L++H+++H
  KWMTBOMO09032 270 YNCRihGCDKSYTHPSSLRKHMKVH 294
                    789999******************9 PP