Silkworm Genome Informatics Database

Gene

KWMTBOMO09032

Pre Gene Modal

BGIBMGA007595

Annotation

PREDICTED:_zinc_finger_protein_ZIC_4_[Amyelois_transitella]

Location

Bomo_Chr15(-):10027572-10056370 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.941

CDS

ATGGTGGCGGGCGAATGGGGCTATGCGCCGGCGTCGGCCACCCCTGCCATGAATGCGTTCCTCGAGACCAATCACGCCCACCTCGCCTCGTATGGGTTGAAGATGTCGCCCCAGCCGGCATGCGGCGTCGATCCCCAACACCGTGCCGTGGCGCCGCATCCACCGCCTCCTCATCATCCGGCCCACTACCAGCCGTACCCCTTGCACTCGTACCAACCAGGGTACTTGCGGGATTACAGTGGATGCGGCGAACTATTCCCGCAGCAGCCTCTCGAACAAAGCTGGGATTGGCGTGGTGACATGCACTACCAGAGTGGCGCTCCTCCCATCGTGCCTCACGCCCACCCTCATGCGCCGCACGCCTTCCTACGATACGTCCGAGCGCCGCCACGACGTGATATGCGTTGCCAGTGGCTCGACCCGGAGCAGCCGCCCCCGCGTAAATTGTGTAATAAACTATTTTCAAGTATGCACGAAATCGTGACGCATTTAACCGTGGAGCACGTCGGTGGACCTGAGTGCACGACTCACGCGTGCTTCTGGCAGGGCTGCTCACGAAACGGCAGGCCGTTCAAGGCGAAATACAAGCTGGTGAATCACATCCGGGTTCACACAGGAGAGAAGCCATTCCCTTGTCCTTTCCCCGGCTGCGGGAAAGTTTTTGCAAGATCGGAAAATCTTAAAATACACAAAAGAACGCATACTGGCGAAAAACCGTTCAAATGCGAATACGCCGGGTGTGATCGAAGATTTGCAAATTCATCGGATCGAAAGAAGCATTCGCACGTGCACACGTCGGATAAACCTTACAACTGTCGGATCCACGGCTGTGACAAGTCATACACGCACCCGTCATCGTTAAGGAAACACATGAAGGTGCACGGAGCTGCCGGAGACGCTTCCCCTAGGTACGACAGCGACGGTGATGACTCATCCTCAGCCGGCAGCGTCAGCGTAACAGCCGGCGCCGCCAGTCCCACTGTACCACTTCCTCCTGCCGCCCAACCAGCGCACCCGCCATCCGGTCACCACCCCCATCACCAACCAACCATAACGGATAAATTAGAAAGCCTCAACGAAAAATACCTCAATCCCCACGATCAGAAACCTTACGAGCGACCGCCAGCGCCCCCACATCACAACCAAGGCCCGCACTTAACGAACATAGGCGGTAACGGGGTCATGGATAATAAAATAGGGTTCGGCGGTCATTGGAGTCAGTTTCAGCAACCGGCGCCGGCGATGCCTCACGGGGTACCAGAGTGGTGGTGTCCCACGCAGGAATCGTACCACCATCACCATCTCATGCATCACTCGGGCGCCGCGGCCGCATACTGA

Protein

MVAGEWGYAPASATPAMNAFLETNHAHLASYGLKMSPQPACGVDPQHRAVAPHPPPPHHPAHYQPYPLHSYQPGYLRDYSGCGELFPQQPLEQSWDWRGDMHYQSGAPPIVPHAHPHAPHAFLRYVRAPPRRDMRCQWLDPEQPPPRKLCNKLFSSMHEIVTHLTVEHVGGPECTTHACFWQGCSRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEYAGCDRRFANSSDRKKHSHVHTSDKPYNCRIHGCDKSYTHPSSLRKHMKVHGAAGDASPRYDSDGDDSSSAGSVSVTAGAASPTVPLPPAAQPAHPPSGHHPHHQPTITDKLESLNEKYLNPHDQKPYERPPAPPHHNQGPHLTNIGGNGVMDNKIGFGGHWSQFQQPAPAMPHGVPEWWCPTQESYHHHHLMHHSGAAAAY

Uniprot

A0A194R7L4 A0A437BJE9

Pubmed

26354079

EMBL

KQ460615 KPJ13637.1 RSAL01000046 RVE50561.1

Proteomes

UP000053240 UP000283053

Pfam

PF18366 zf_ZIC + More
PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR041643   Znf_ZIC

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A194R7L4 A0A437BJE9

PDB

2RPC E-value=1.83005e-56, Score=555

KEGG

101739583 K09227 zinc finger protein ZIC, invertebrate | (RefSeq) pair-rule protein odd-paired-like

GO

GO:0003676 GO:0046872 GO:0016020 GO:0042626 GO:0016887 GO:0005254 GO:0006811 GO:0016876 GO:0043039

Length:

445

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00657

Exp number, first 60 AAs:

0.00657

Total prob of N-in:

0.00222

outside

1 - 445

Pi

243.077227

Theta

184.523166

Tajima's D

1.627786

CLR

0.477729

CSRT

0.811809409529524

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics