HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.5	2.7	0.011	0.63	1	23	277	300
2	13.0	1.2	0.0018	0.11	2	23	308	329
3	5.3	0.6	0.5	30	1	19	333	351
4	16.6	4.0	0.00012	0.0074	2	23	361	382
5	10.1	0.7	0.015	0.88	3	23	388	409
6	6.1	0.2	0.28	17	2	20	426	444
7	13.9	0.9	0.00088	0.053	2	23	477	499
8	19.5	0.5	1.5e-05	0.00088	1	23	547	569
9	14.9	0.5	0.00044	0.026	2	23	576	598

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C k F+  +++krH +  H
  KWMTBOMO11841 277 YKCTFCLKGFSKEDMMKRHNKLrH 300
                    9******************98877 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0018
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C  C  +Fk ks+L+rHir H
  KWMTBOMO11841 308 ECRFCRIRFKWKSLLRRHIREH 329
                    6*******************99 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.5
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ykC  C+  F+r  + ++H
  KWMTBOMO11841 333 YKCLRCDLIFSRETSAQHH 351
                    9***********9998888 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 0.00012
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+++Fk+ s + +H+r+H
  KWMTBOMO11841 361 TCEYCNETFKHLSTYYTHLRKH 382
                    7********************9 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.015
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C  Cg+sF +   L  H+r+ H
  KWMTBOMO11841 388 CALCGESFVSEFGLYMHRRVkH 409
                    99*****************999 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.28
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C+ C+ +F ++  ++ H+
  KWMTBOMO11841 426 YCERCDIKFESRRAYEEHL 444
                    6*****************7 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 0.00088
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C+k F++   +++H +  H
  KWMTBOMO11841 477 PCTICNKNFSTLVAYMKHHQAeH 499
                    6*****************98777 PP

  == domain 8  score: 19.5 bits;  conditional E-value: 1.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  Cg+ F+ k  L+rH+ tH
  KWMTBOMO11841 547 YTCATCGMQFNAKGTLQRHYLTH 569
                    9*********************9 PP

  == domain 9  score: 14.9 bits;  conditional E-value: 0.00044
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C+k+F++  ++k H+rt H
  KWMTBOMO11841 576 ECSLCDKRFTQVASMKLHYRTiH 598
                    6********************99 PP