SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08958
Pre Gene Modal
BGIBMGA007797
Annotation
PREDICTED:_zinc-responsive_transcriptional_regulator_ZAP1-like_[Papilio_polytes]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.282
 

Sequence

CDS
ATGCGATCTGTAAACGTGTTCATGGAATCGCCCGACTCTAGGTCGAATCCTTTGTTATCGGAGGAACCGAAAGAACAGAACAACAATAGCTTGTTAAGTGTTGCGACGACGCAGGCGAACACAAGCGCAATGACAGCCGCGACTACTTCTACTACACTACAAAGTTTCGACTCGATATGGAATGTAGATCGTGATCGAGATCGCTTGGACACTTCAATGCTAGAGGACTTAAATAAATTTAGTTATTGGAACCAAGATAGTGAAATAGCGGACACCCCCTGCACGGATACGACAATTTCAAATAAACTAATCAACAATACCGATGGTCAAATATATACTCTTACTGTCCTCAATCACGATATAACAGAAAACAGTTCAAGTCGCTATTGGAGTAAAGACGAAGACGTTTCTATGTCTAGTCCGGCAGACATAGAACCCAATCCTGCATTGGATCTGGAATCAATATTAAATATGAATGGATTCCCAAACGATTTCAACCAAGATCTCCCCAAACCTTTTCATTTTGAAGATGGTGATTCAGAGAGTCAAAACAATGATCTGAACTCAAGTAATCTAGTAAAAGTGGAACAATATTACGATGAAAACGAATATACAAACAGTGATAAGAATGATGACACGCAAAGCTCCTCTTTAATTGGTGCTGCAACTTTACTGGATACTCAAATCGAATTTAACAACAATAACAATGACTGGAAAGCAACAAATAACAATGCGAATGAATCTTTACTTAGAAGTGCATTACAGGGAAAAGCTTATTTCCGTACTGTTCAAAAAAGTACTGTTACTAAAATAGACGCCAATGCTGAATTGAAGCGAGTCATAATCAATAATAATAACAAAGCTGACGTACCATCTATGTACCAAGATGCAAAGGACGCCGATCCGGAATTATTGATGGCAATTTCACCTCCAAACGGAAATGTCAACATTTCAATTTTATTAGAGGATCCAAGCACAGCTGTTATAACTAATGGAGAAAACCCGACATCGACGCAGCAAAGCGTGGATGACATTTTGCTGTCTCAGTTGGATGCGAACTATCCTGAAGACTATGAAAAATTAAAAAGAATAGCCACGGAGCTTGGTGAATCAATGCAACCATTCTGCACTGTAGAACCCATTGATCCTACTCGAAGTGTCTACAACATCCATCATGTGAATGGTGAATTAGTGACGATGATTCCAGCTGGGGAAGTACAACTCCCTCATAACTTGCAAATAGTCACCGCTTCACCAGCAGTTACGAGCACAAAAAACACAAAGAGATCTCTGCATTACTGTTCTATTTGTTCAAAAGGGTTCAAAGATAAATATTCTGTAAACGTACACGTAAGAACACATACTGGGGAGAAACCGTTTACATGTTCCCTATGCGGAAAGAGTTTCAGACAGAAAGCACATCTCGCGAAGCACTACCAGACACACGTAGCACAAAAAGCGGCCGCCGCCAACGGCGCTGTCAAACCCAACAAGCAAAGGTAG
Protein
MRSVNVFMESPDSRSNPLLSEEPKEQNNNSLLSVATTQANTSAMTAATTSTTLQSFDSIWNVDRDRDRLDTSMLEDLNKFSYWNQDSEIADTPCTDTTISNKLINNTDGQIYTLTVLNHDITENSSSRYWSKDEDVSMSSPADIEPNPALDLESILNMNGFPNDFNQDLPKPFHFEDGDSESQNNDLNSSNLVKVEQYYDENEYTNSDKNDDTQSSSLIGAATLLDTQIEFNNNNNDWKATNNNANESLLRSALQGKAYFRTVQKSTVTKIDANAELKRVIINNNNKADVPSMYQDAKDADPELLMAISPPNGNVNISILLEDPSTAVITNGENPTSTQQSVDDILLSQLDANYPEDYEKLKRIATELGESMQPFCTVEPIDPTRSVYNIHHVNGELVTMIPAGEVQLPHNLQIVTASPAVTSTKNTKRSLHYCSICSKGFKDKYSVNVHVRTHTGEKPFTCSLCGKSFRQKAHLAKHYQTHVAQKAAAANGAVKPNKQR

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF57667   SSF57667       
PDB
5V3G     E-value=8.61246e-12,     Score=171

Ontologies

Topology

Length:
500
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0014
Exp number, first 60 AAs:
0.00133
Total prob of N-in:
0.00310
outside
1  -  500
 
 

Population Genetic Test Statistics

Pi
301.850822
Theta
233.89778
Tajima's D
1.073784
CLR
0.063379
CSRT
0.67631618419079
Interpretation
Uncertain
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