HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.6	2.7	0.021	1.3	1	23	154	177
2	14.6	3.0	0.00052	0.031	1	23	183	206
3	19.5	1.7	1.5e-05	0.00091	2	23	213	234
4	4.4	0.5	0.9	54	1	19	243	262
5	17.6	1.5	5.9e-05	0.0035	3	23	275	295
6	7.9	0.1	0.072	4.3	2	20	300	318

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.021
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + Cp+C ks+++  ++++H+   H
  KWMTBOMO08863 154 FHCPHCRKSYPTILEFNTHLTGvH 177
                    78*****************97666 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 0.00052
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C +C ++F  ks+L+rH+   H
  KWMTBOMO08863 183 FRCQICLEPFHKKSHLRRHLDAlH 206
                    89*****************97666 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 1.5e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++C+k  k+ksnL++H+++H
  KWMTBOMO08863 213 KCSVCSKYIKDKSNLRKHMQVH 234
                    7*******************99 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.9
                    EEETTTT.EEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCg.ksFkrksnLkrH 19 
                    +kC+ C+ k++ + + L++H
  KWMTBOMO08863 243 FKCDLCNnKRYMSLDRLNNH 262
                    8**********999999999 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 5.9e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+k+F ++ +L++H+++H
  KWMTBOMO08863 275 CDMCSKVFDNSRSLNSHRKVH 295
                    *******************99 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.072
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    kC+ Cg+  ++ +++++H 
  KWMTBOMO08863 300 KCENCGEQLRSLEQFTTHK 318
                    8*****************7 PP