HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.9	1.2	0.31	19	3	23	179	200
2	7.8	2.0	0.08	4.8	1	23	206	229
3	18.8	4.3	2.4e-05	0.0014	1	23	235	257
4	21.8	2.6	2.7e-06	0.00016	1	23	263	285
5	20.8	0.2	5.8e-06	0.00035	1	23	291	313
6	12.6	1.4	0.0024	0.14	1	23	319	341
7	16.2	3.2	0.00016	0.0097	2	23	436	458
8	13.3	1.1	0.0014	0.083	1	19	464	482
9	11.0	2.1	0.0074	0.44	3	21	494	512
10	12.6	0.0	0.0023	0.13	5	23	525	543

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.31
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +C++ F +++  k H    H
  KWMTBOMO08847 179 CQYCDQAFISQEKCKEHELNyH 200
                    **********998888866555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.08
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC +C+  F  + ++++H +  H
  KWMTBOMO08847 206 FKCYECSLAFVERNQYVQHTKHvH 229
                    8******************99888 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 2.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C+k+F r+s+L++H  +H
  KWMTBOMO08847 235 YHCPECNKCFGRRSDLRKHSIVH 257
                    89*****************8887 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 2.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  C ksF+r+ nL +H+r+H
  KWMTBOMO08847 263 YQCQFCLKSFSRNTNLSKHLRIH 285
                    9*********************9 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 5.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp C++sF  k +L+rH  +H
  KWMTBOMO08847 291 HVCPLCPRSFVAKGDLQRHVLVH 313
                    79******************999 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.0024
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C+ +F r++ L +H  +H
  KWMTBOMO08847 319 YSCRKCPSTFGRRDKLIKHELKH 341
                    89*****************9999 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 0.00016
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++C+k+F++ + +k+H ++ H
  KWMTBOMO08847 436 KCHHCTKKFSSLDAYKTHVSIaH 458
                    8*****************99988 PP

  == domain 8  score: 13.3 bits;  conditional E-value: 0.0014
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ++C++C k+F+ k +L rH
  KWMTBOMO08847 464 FQCKICFKKFSKKRELDRH 482
                    89***************** PP

  == domain 9  score: 11.0 bits;  conditional E-value: 0.0074
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C++C+k+F+ k+ + +H +
  KWMTBOMO08847 494 CDHCDKKFTKKDKFDKHKQ 512
                    *****************75 PP

  == domain 10  score: 12.6 bits;  conditional E-value: 0.0023
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    +Cg +F  k +L++Hi++H
  KWMTBOMO08847 525 ECGVTFEKKADLVAHIKSH 543
                    8*****************9 PP