HMM length of domain: 376 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	42.7	0.2	2.5e-14	4.2e-11	1	35	377	411
2	263.9	1.6	1.5e-81	2.5e-78	154	375	499	709

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.5e-14
      GCNF-like   1 AvREDrmPGGRNksivyvqikekeierkksgqefe 35 
                    AvREDrmPGGRN+++vy+++k+k+++ kk+++   
  KWMTBOMO08777 377 AVREDRMPGGRNSGAVYNLYKVKYKKNKKANKTAT 411
                    9*****************************99765 PP

  == domain 2  score: 263.9 bits;  conditional E-value: 1.5e-81
      GCNF-like 154 lvdkselsekLcriaDelvfrlvsWiKkLPFflelsvedhTkLLtdkWaelilLssaayqalpls.tpiPspaqpldkddeelvvesnqllgeLad 248
                    l d se+s+kLc+i+D++v+++v+W+KkLPF +e+++e+h kLL +kW+e+ +L++aayqa+    t  P    p  + ++ ++ e+n +l++L++
  KWMTBOMO08777 499 LHDTSEISDKLCKIGDSIVHKMVAWTKKLPFIMEIPMEIHSKLLMEKWHEISVLTTAAYQAMHGKqTHAP----PSSDHEQDFMQEVNANLRTLQN 590
                    6799*********************************************************853303333....33445667************** PP

      GCNF-like 249 vlskllgseeelerlkedagevvekltqllrkFrrlkvskEeYvclKviilLnkdekglseveeleslqeryvkvlrsylenkspqnpkarlsell 344
                    +l+ l+g +++le+l +d+g vvek+tq++  Frr+++ +EeYvclKv+ilLn++ +       le +q+ryv+vlrsyle+ +p++p  rl+el+
  KWMTBOMO08777 591 CLTSLMGRPITLEQLRLDVGLVVEKMTQITCVFRRIQLRMEEYVCLKVYILLNQEVE-------LEGIQDRYVQVLRSYLEHANPHHPG-RLQELF 678
                    ******************************************************998.......************************9.****** PP

      GCNF-like 345 sclpeiraaaskllesklfyvPlllkavlir 375
                      +pei+aaa +llesk+fyvP++l+++ ir
  KWMTBOMO08777 679 ARIPEIQAAANLLLESKMFYVPFVLNSAEIR 709
                    ***************************9875 PP